FC924920

Overview
NameFC924920
Unique NameFC924920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.114e-45
Identity = 92/204 (45.10%), Postives = 125/204 (61.27%), Query Frame = 3
Query:  105 IFSLFVGLLMV-----------GLVSSAKFDDLYQTSWAFNHVQ--YDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGK 677
            IFS+FV  L +           G+     F   Y  +W  +HV   + G+ + L +D  SG GF SK  Y  G   ++IK+  G++ G VTAFY++S G  H+E DFEFLGN  G+P  +QTN+++NG GNRE+R  LWF+PTK +HTY LLWN  Q+VF VD  PIRV+ N    G+ +P  + M V +S+WN DDWAT GG+
Sbjct:    6 IFSVFVVTLWIIRVDARVFGGRGIEKFVTFGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGGGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKN--ENGVSYP-SKPMQVEASLWNGDDWATDGGR 206          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.017e-45
Identity = 89/196 (45.41%), Postives = 124/196 (63.27%), Query Frame = 3
Query:   96 MSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGK 677
            +S++F +F          +  FD  Y  +W  +H+     G  ++L++D  SG+GF SKS Y  G   ++IKL   DSAG VTAFY++S G  H+E DFEFLGN  G+P  +QTNV+ NG G REQ+   WFDPT  FHTY +LWN  Q+VF VD+ PIRV  N++  G+ +P  + M + +S+WN ++WAT GGK
Sbjct:   11 VSVLFLMFTANARARGRGAIDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYP-SKPMQLVASLWNGENWATSGGK 205          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.482e-44
Identity = 89/181 (49.17%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  147 SSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGKGQ 683
            S   FDD Y  +W  N+V     G  ++L+LD+ SG+GF SK+ Y  G   I+IK+   D++G VTAFY++S G  H+E DFEFLGN  G+   VQTNV+ NG GNREQ+L LWFDP+K+FHTY++LWN  Q+V  VD  P+RV  N   +G+ +P  + M V  S+WN ++WAT GGK +
Sbjct:   35 SKVGFDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKGNTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYP-SKPMQVVVSLWNGENWATDGGKSK 213          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 84/199 (42.21%), Postives = 132/199 (66.33%), Query Frame = 3
Query:   96 MSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY---DGDT--LKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSS-DGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            +S+  ++ V  L     ++A F + +    A +HV+    DG T  + L LD  SG+GF SK  YLFG+ S+Q+KLVGG+SAGTVT+FY+SS +G  H+E D EF+GN +G PY++ TNV+ NG G +E +  LWFDPT +FHTY ++WN + ++F VD+ P+R  T  ++  + +P+ + M +++++W+   WAT+ G
Sbjct:    7 LSVAAAVAVSWLAASSAAAAGFYEKFDVVGAGDHVRVVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVR--TFKKYDDLAYPQSKPMRLHATLWDGSYWATRHG 203          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 81/186 (43.55%), Postives = 116/186 (62.37%), Query Frame = 3
Query:  144 VSSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN---HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR-----EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGK 677
            V ++ FD  ++T W   H + + D + L LD  +G+GF S   Y  G     IKL  G +AG  T+ Y+S++  +   H+E D EFLG T G+PY +QTNV+V G G+R     E +  LWFDPT++FH Y++LWN  Q+VF VD+ PIR + N +++ I FP  + M VY SIW+A DWAT+ G+
Sbjct:   34 VPTSPFDREFRTLWGSQHQRREQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTY-NRKNEAI-FP-TRPMWVYGSIWDASDWATENGR 216          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 88/204 (43.14%), Postives = 118/204 (57.84%), Query Frame = 3
Query:   87 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGN--REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGK 677
            +V MSL  SL  G  +  L    +FD+ Y   +   +  V  DG +++L LD  +G+GF S   YL G  S  IKL    SAG V AFY+S+      NH+E DFEFLGN  G  + +QTN+Y NG  +  RE+R +LWFDPT++FH YS+LW+   ++F VD  PIR        G  FP  + M +YS+IW+   WAT GGK
Sbjct:    8 LVFMSLFTSLVSGFALQKL-PLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGK 209          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.491e-36
Identity = 85/204 (41.67%), Postives = 117/204 (57.35%), Query Frame = 3
Query:   87 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGV--GNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGK 677
            +V MSL   L  G  +  L  ++ F++ Y   +   +  V  DG +++L LD  +G+GF S   YL G  S  IKL    +AG V AFYMS+      NH+E DFEFLGN   + + VQTN+Y NG     RE+R +LWFDPT++FH YS+LW+   ++F VD  PIR        G  FP  + M +Y++IW+   WAT GGK
Sbjct:    8 LVFMSLFSGLVSGFALQNLPITS-FEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFP-SKPMSLYTTIWDGSKWATNGGK 209          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.859e-35
Identity = 76/186 (40.86%), Postives = 109/186 (58.60%), Query Frame = 3
Query:  144 VSSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN---HNEFDFEFLGNTTGEPYLVQTNVYVNGVGN-----REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGK 677
            V S  F   ++  W   H + D + L + LD  SG+GF S   +  G     IKL  G +AG +T+ Y+S++  +   H+E D EFLG T G+PY +QTNVY+ G G+     RE +  LWFDPTK+FH Y++LW+ R+++FLVD+ PIR +        P    + M +Y SIW+A  WAT+ GK
Sbjct:   38 VGSLNFYKGFRNLWGPQHQRMDQNALTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSASTFPL---RPMWLYGSIWDASSWATEDGK 220          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.123e-34
Identity = 83/203 (40.89%), Postives = 118/203 (58.13%), Query Frame = 3
Query:  114 LFVGLLMVGLVSSAKFDDLYQTSWAFNHVQYDGD----------TLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR--EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGK 677
            +F+ +L + L SS+ F +L   S+  +     GD          +++L LD Y+G+GF S + Y  G  S  IKL    +AG V AFY S+       H+E D EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+KEFH YS+LW   +++F VD+ PIR     +  G  +P  + M +Y++IW+A DWAT GGK
Sbjct:    9 IFILILCLCLRSSSAFTNLNTLSFEESLSPLFGDANLVRSPDDLSVRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPA-KPMALYATIWDASDWATSGGK 210          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.123e-34
Identity = 76/162 (46.91%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  207 DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR--EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGK 677
            D  +++L LD Y+G+GF S S Y  G  S  IKL G  +AG V AFY S+      +H+E D EFLGN  G+P+  QTN+Y NG  NR  E+R  LWFDP+KEFH YS+LW   +++F VD+ PIR     E     +P+ + M +Y++IW+A  WAT GGK
Sbjct:   58 DDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQ-KPMSLYATIWDASSWATSGGK 218          
The following BLAST results are available for this feature:
BLAST of FC924920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH3_ARATH4.114e-4545.10Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH2_ARATH7.017e-4545.41Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH3.482e-4449.17Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ6.568e-4342.21Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH31_ARATH1.567e-3643.55Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH1.567e-3643.14Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH3.491e-3641.67Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH3.859e-3540.86Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH1.123e-3440.89Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH1.123e-3446.91Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM03FM1 TF Citrus clementina cDNA clone KN0AAP1YM03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924920 ID=FC924920; Name=FC924920; organism=Citrus clementina; type=EST; length=712bp
AGAAGCTTCAACTTCCCTCCACTTCACTGGGCCTGCTCTGCTCATTCGCT
TACTTCCTCTCCCCGTTCTTCTGTCTTCATTCTTCAATGGTTAAAATGTC
TTTGATTTTCAGTCTGTTTGTGGGTCTTTTAATGGTAGGTTTGGTCAGCT
CAGCTAAGTTTGATGACCTTTATCAAACAAGCTGGGCATTTAATCATGTT
CAGTATGATGGGGACACTCTCAAGCTTAACCTCGATAATTATTCCGGAGC
TGGGTTTGCGTCAAAGAGCAAGTATTTGTTTGGGAAAGTCTCCATCCAAA
TTAAACTTGTAGGGGGTGACTCTGCTGGAACTGTCACTGCCTTCTATATG
TCATCAGACGGTCCAAATCACAACGAGTTCGATTTTGAGTTCCTGGGGAA
CACTACAGGAGAGCCATACTTAGTCCAAACCAATGTTTATGTGAATGGTG
TGGGCAACAGAGAGCAGAGACTTGACCTCTGGTTCGACCCAACAAAGGAA
TTTCATACCTATTCCCTCCTTTGGAACCAGCGCCAAGTTGTATTTTTGGT
GGATGAGACCCCAATTAGAGTGCACACTAACTTGGAGCACAAAGGAATTC
CCTTCCCAAAGGACCAAGCCATGGGTGTGTACAGTTCAATATGGAATGCT
GATGACTGGGCCACACAGGGGGGGAAAGGTCAAGACAGACTGGAAGCCTT
GCACCTTTTGTT
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