FC924921

Overview
NameFC924921
Unique NameFC924921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924921 vs. ExPASy Swiss-Prot
Match: LYPA2_HUMAN (Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYPLA2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  144 ILWLHGLGDSGPANEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSWFDIHEIPVTASSPKDESSLLKAVQNVHAMIDKGVAAGIDPNNVFVCGFSQGG 455
            +++LHGLGD+G +     +    P     K+  P AP  PVT N   VMPSWFD+  + ++  +P+DE+ + KA +N+ A+I+  +  GI  N + + GFSQGG
Sbjct:   27 VIFLHGLGDTGHSWADALSTIRLPH---VKYICPHAPRIPVTLNMKMVMPSWFDL--MGLSPDAPEDEAGIKKAAENIKALIEHEMKNGIPANRIVLGGFSQGG 125          
BLAST of FC924921 vs. ExPASy Swiss-Prot
Match: APTH1_KLULA (Acyl-protein thioesterase 1 OS=Kluyveromyces lactis GN=KLLA0F17908g PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.658e-13
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 3
Query:  132 ARNFILWLHGLGDSGPANEPI-KTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSWFDIHEIPVTASSPKDESSLLKAVQNVHAMIDKGVAAGIDPNNVFVCGFSQG 452
            A+N IL  HGLGDSG     + + L  SP F  T++ FP+APN  +  N G  MP+WF+I++      +  D   +  +++ +++ I + +  GI P N+ + GFSQG
Sbjct:   15 AKNVILVFHGLGDSGSGWSFLAEYLQRSPAFAHTRFVFPNAPNMRIDANGGMSMPAWFNIYDW-ANPDARVDVEGIKSSLKVINSFIQEQIDDGISPENIILGGFSQG 121          

HSP 2 Score: 25.7942 bits (55), Expect = 1.658e-13
Identity = 14/27 (51.85%), Postives = 16/27 (59.26%), Query Frame = 1
Query:  526 SSVGALTLASVLLYPRKLGGGAIFSGW 606
            S   ALTLAS +  P KLGG    SG+
Sbjct:  119 SQGAALTLASTVTSPYKLGGFFALSGF 145          
BLAST of FC924921 vs. ExPASy Swiss-Prot
Match: APTH1_YARLI (Acyl-protein thioesterase 1 OS=Yarrowia lipolytica GN=YALI0A18337g PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.659e-13
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 3
Query:  144 ILWLHGLGDSGP-----ANEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSWFDIHEIPVTASSPKDESSLLKAVQNVHAMIDKGVAAGIDPNNVFVCGFSQG 452
            +++LHGLGDSG      A E  K    +      K+ FP AP  PV+ N+G  MPSW+DI E+    ++ +D+  +L++V  + ++I +   AG+  N + + GFSQG
Sbjct:   19 VIFLHGLGDSGAGWMFLAEEARK----AQRLNHVKFIFPEAPQQPVSLNFGMRMPSWYDIKEL-ANVNAAQDQEGILESVGRLESLIKEETDAGVPANRIVIGGFSQG 121          

HSP 2 Score: 22.7126 bits (47), Expect = 1.659e-13
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  538 ALTLASVLLYPRKLGGGAIFSGWVP 612
            A++LA+  L   KLGG    SG+VP
Sbjct:  123 AVSLATGCLTQTKLGGIVGLSGYVP 147          
BLAST of FC924921 vs. ExPASy Swiss-Prot
Match: APTH1_CANGA (Acyl-protein thioesterase 1 OS=Candida glabrata GN=CAGL0D02398g PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  132 ARNFILWLHGLGDSGPANEPIKTLFTS--PEFKLTKWSFPSAPNNPVTCNYGAVMPSWFDIHEIPVTASSPKDESSLLKAVQNVHAMIDKGVAAGIDPNNVFVCGFSQG 452
            A+  +++LHGLGD+G     +        P F+ T + FP+AP  PVT N G  MPSWFDI     T S+  D     ++++ V   +D  ++ GI+P N+ V GFSQG
Sbjct:   14 AKYALIFLHGLGDTGQGWSFLAQYLQQYHPCFESTNFIFPNAPIKPVTANGGMPMPSWFDIKVWDWTTSN-VDTVGFQQSLKEVQKYVDSSISDGIEPQNIIVGGFSQG 121          
BLAST of FC924921 vs. ExPASy Swiss-Prot
Match: APTH1_USTMA (Acyl-protein thioesterase 1 OS=Ustilago maydis GN=UM00130 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.000e-11
Identity = 41/113 (36.28%), Postives = 58/113 (51.33%), Query Frame = 3
Query:  144 ILWLHGLGDSGPA-NEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSWFDIHEIPVTASSPKDESSLLKAVQNVHAMI---DKGVAAGID-----PNNVFVCGFSQGG 455
            + +LHGLGDS    ++  + L   P     ++  P+AP  PVT N G  MPSWFDI  +    S  +DE+ LLK+   +  +I   + G A  +D        + V GFSQGG
Sbjct:   21 LFFLHGLGDSSAGWSDVAQMLSQRPSLSHVRFVLPNAPIQPVTLNMGMPMPSWFDILALD-DLSGAEDEAGLLKSTDEIKKLIKAENDGTAKDLDGHKIPSERIVVGGFSQGG 132          

HSP 2 Score: 23.483 bits (49), Expect = 4.000e-11
Identity = 11/29 (37.93%), Postives = 16/29 (55.17%), Query Frame = 1
Query:  526 SSVGALTLASVLLYPRKLGGGAIFSGWVP 612
            S  GA++L + L  P  + G A  S W+P
Sbjct:  129 SQGGAISLLTGLTNPTPVAGVAALSTWLP 157          
BLAST of FC924921 vs. ExPASy Swiss-Prot
Match: EST1_PSEFL (Carboxylesterase 1 OS=Pseudomonas fluorescens GN=estA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 42/113 (37.17%), Postives = 56/113 (49.56%), Query Frame = 3
Query:  144 ILWLHGLG----DSGPANEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSWFDIHEIPVTASSPKDESSLLKAVQNVHAMIDKGVAAGIDPNNVFVCGFSQGGLSFTH 470
            ++WLHGLG    D  P  E ++    S  F L     P AP  PVT N G  MPSW+DI  +    S   +E  L  + + V  +I+     GID + +F+ GFSQGG    H
Sbjct:   17 VIWLHGLGADRYDFLPVAEALQETLLSTRFVL-----PQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEE--LETSAKTVTDLIETQQRTGIDTSRIFLAGFSQGGAVVFH 122          
BLAST of FC924921 vs. ExPASy Swiss-Prot
Match: APTH1_YEAST (Acyl-protein thioesterase 1 OS=Saccharomyces cerevisiae GN=YLR118C PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 38/110 (34.55%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  132 ARNFILWLHGLGDSGPANEPIKTLFTSPE---FKLTKWSFPSAPNNPVTCNYGAVMPSWFDIHEIPVTASSPKDESSLLKAVQNVHAMIDKGVAAGIDPNNVFVCGFSQG 452
            AR  I++LHGLGD+G     +       +   F+ T + FP+AP   VT N GA+MP+WFDI E    + S  D    + ++ ++   + + +  GI P  + + GFSQG
Sbjct:   13 ARQTIIFLHGLGDTGSGWGFLAQYLQQRDPAAFQHTNFVFPNAPELHVTANGGALMPAWFDILEWD-PSFSKVDSDGFMNSLNSIEKTVKQEIDKGIKPEQIIIGGFSQG 121          
BLAST of FC924921 vs. ExPASy Swiss-Prot
Match: APTH1_NEUCR (Acyl-protein thioesterase 1 OS=Neurospora crassa GN=B2J23.070 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 35/108 (32.41%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  144 ILWLHGLGDSGPA-NEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSWFDIHEIPVTASS---PKDESSLLKAVQNVHAMIDKGVAAGIDPNNVFVCGFSQGG 455
            ++++HGLGD+G      ++           K+  P AP+ P+T N+G  MP W+DI  I  +A +    +DE+ +L +    H +I K + +GI  + + + GFSQGG
Sbjct:   22 VIFIHGLGDTGHGWASAVEQWRRRQRLDEVKFILPHAPSIPITANWGMKMPGWYDIFAIDGSAEALRRNEDEAGILTSQAYFHDLIQKEIDSGIPADRIVIGGFSQGG 129          
The following BLAST results are available for this feature:
BLAST of FC924921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
LYPA2_HUMAN1.072e-1338.46Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYP... [more]
APTH1_KLULA1.658e-1336.11Acyl-protein thioesterase 1 OS=Kluyveromyces lacti... [more]
APTH1_YARLI1.659e-1336.11Acyl-protein thioesterase 1 OS=Yarrowia lipolytica... [more]
APTH1_CANGA3.119e-1338.53Acyl-protein thioesterase 1 OS=Candida glabrata GN... [more]
APTH1_USTMA4.000e-1136.28Acyl-protein thioesterase 1 OS=Ustilago maydis GN=... [more]
EST1_PSEFL4.979e-1137.17Carboxylesterase 1 OS=Pseudomonas fluorescens GN=e... [more]
APTH1_YEAST6.503e-1134.55Acyl-protein thioesterase 1 OS=Saccharomyces cerev... [more]
APTH1_NEUCR8.493e-1132.41Acyl-protein thioesterase 1 OS=Neurospora crassa G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YN15FM1 TF Citrus clementina cDNA clone KN0AAP6YN15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924921 ID=FC924921; Name=FC924921; organism=Citrus clementina; type=EST; length=615bp
AGAAATGCCGGGATGAATCGATGTTATTGACGAAACCGATCGTTCTATTT
ACGGTGATTTTGAGCGGCACCATTATATTCATTCTATTTTTCTGGCCGAG
TTCATCGTATTCACACGAACAAAATCCCATGGCTCGAAACTTTATATTGT
GGCTCCATGGCTTGGGTGACTCGGGTCCAGCCAATGAACCCATCAAAACT
CTCTTCACTTCTCCTGAGTTTAAACTCACCAAATGGTCCTTCCCTTCTGC
TCCTAACAACCCTGTTACTTGTAACTATGGTGCTGTGATGCCTTCATGGT
TTGACATTCATGAGATTCCTGTGACTGCTAGTTCTCCGAAAGATGAATCT
AGTTTGCTGAAAGCAGTTCAAAATGTGCATGCAATGATAGACAAGGGAGT
AGCTGCTGGGATAGATCCTAATAATGTTTTCGTCTGTGGATTTAGTCAAG
GAGGTCTTTCTTTCACACATGCAGAAAAAAGGAATTGCTGGTTTGCTATT
TTTATTGCCTCTTATATGAAGACTATCTTCTGTAGGTGCCTTAACTTTGG
CTAGTGTTCTGTTATACCCAAGAAAACTTGGAGGAGGTGCAATTTTTAGT
GGATGGGTTCCTTTT
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