FC924929

Overview
NameFC924929
Unique NameFC924929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.519e-24
Identity = 52/78 (66.67%), Postives = 61/78 (78.21%), Query Frame = 2
Query:  401 GGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            GG    SLP PFL+KTY++VDDPS D ++ W   G++F+V    EF RDLLPKYFKHNNFSSFVRQLNTYGFRKV P+
Sbjct:    3 GGGGGGSLP-PFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPE 79          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.208e-24
Identity = 46/86 (53.49%), Postives = 64/86 (74.42%), Query Frame = 2
Query:  377 QTSESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            ++S     GG      P PFL KTY++V+D + + +++W   G++F+VW P +F+RDLLPKYFKHNNFSSF+RQLNTYGFRK+ P+
Sbjct:    2 ESSNLGGGGGGGGGGGPPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPE 87          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSFA5_ARATH (Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.414e-24
Identity = 48/84 (57.14%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  383 SESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            S +  +GG+     P PFL KTY++VDD S D +++W+++ ++FIVW  AEF+R LLP YFKHNNFSSF+RQLNTYGFRK+ P+
Sbjct:    8 SSASVSGGEGAGG-PAPFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPE 90          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.097e-23
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 2
Query:  425 PTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKV 625
            P PFL KTY++V+DP+ D +I+WN  G+ F+VW+PAEFARDLLP  FKH NFSSFVRQLNTYGFRKV
Sbjct:   38 PPPFLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKV 104          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.097e-23
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 2
Query:  401 GGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            GG S  SLP PFLTKTY++VDD S D ++AW+ +  +FIV  PAEF+RDLLP++FKH NFSSF+RQLNTYGFRKV P+
Sbjct:    6 GGSS--SLP-PFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPE 80          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.672e-23
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 2
Query:  425 PTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            P PFLTKTY +VDDP+ D +++W++  ++F+VW P  F   LLP+YFKHNNFSSFVRQLNTYGFRKV PD
Sbjct:   36 PPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPD 105          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.672e-23
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  371 VEQTSESPATGGDSQRSLPTP------FLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            +E   ES  +   +  S+P P      FL+KTY +VDDP  +++++W+S  ++F+VW   EF++ LLPKYFKHNNFSSFVRQLNTYGFRKV PD
Sbjct:    1 MESVPESVPSPNSNTPSIPPPVNSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPD 94          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.359e-22
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2
Query:  425 PTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            P PFLTKTY LV+DP+ D +++W+  G++F+VW P  FA  LLP+ FKHNNFSSFVRQLNTYGFRKV PD
Sbjct:   40 PPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPD 109          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.319e-22
Identity = 50/92 (54.35%), Postives = 62/92 (67.39%), Query Frame = 2
Query:  359 PMAPVEQTSESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            P +P E  +  P  G       P PFLTKT+ LV DP+ D +++W   GS+F+VW P  FA   LP++FKHNNFSSFVRQLNTYGFRK+ PD
Sbjct:   15 PSSPEEGEAPRPMEG--LHEVGPPPFLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYGFRKIDPD 104          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSFA3_ARATH (Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.165e-22
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 2
Query:  431 PFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            PFL+KT+ LVDDP++D +I+W   G++F+VW P EFAR +LP+ FKHNNFSSFVRQLNTYGFRK+  D
Sbjct:   55 PFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTD 122          
The following BLAST results are available for this feature:
BLAST of FC924929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HFA4B_ORYSJ5.519e-2466.67Heat stress transcription factor A-4b OS=Oryza sat... [more]
HFA4D_ORYSJ7.208e-2453.49Heat stress transcription factor A-4d OS=Oryza sat... [more]
HSFA5_ARATH9.414e-2457.14Heat stress transcription factor A-5 OS=Arabidopsi... [more]
HSFB3_ARATH2.097e-2371.64Heat stress transcription factor B-3 OS=Arabidopsi... [more]
HFA4C_ARATH2.097e-2366.67Heat stress transcription factor A-4c OS=Arabidops... [more]
HFA2E_ORYSJ4.672e-2365.71Heat stress transcription factor A-2e OS=Oryza sat... [more]
HFA1B_ARATH4.672e-2353.19Heat stress transcription factor A-1b OS=Arabidops... [more]
HFA2C_ORYSJ1.359e-2267.14Heat stress transcription factor A-2c OS=Oryza sat... [more]
HFA2D_ORYSJ2.319e-2254.35Heat stress transcription factor A-2d OS=Oryza sat... [more]
HSFA3_ARATH5.165e-2266.18Heat stress transcription factor A-3 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM10FM1 TF Citrus clementina cDNA clone KN0AAP1YM10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924929 ID=FC924929; Name=FC924929; organism=Citrus clementina; type=EST; length=634bp
TCATTTACTCCACTCAGAACCTTCTAGAAACAACAAAACCTAACCCAACC
CAACCCAACACAACACATGCGAACTCATCTCTCTCTAGCTCCCTCCCTCC
CTCCCTCCCTCGCATGCTCACCGTTTGAGGTCATCCATCATTTCTGAACC
TCCTGGTTTTCAACTTTCAACGGCGTCTGATCGAGTTCCAACTTTCAACG
CTGCACGTTGAACAGTGGTTTATTCTTCGCTTGTTAGGTTTGGTGAGAAA
ATAATCAAAATTCCTCTTCATTACCCAACGTACAGATTGAGCGTTAGCAA
TTAGCAGAAGCGAAGAGAGAGTTGCAGGATTGATAGGGTTGGGATCTGAG
GTATTGACCCGATGGCTCCGGTTGAGCAGACGAGCGAATCTCCTGCAACA
GGAGGAGACTCGCAGAGATCTCTTCCGACGCCGTTTTTGACCAAAACTTA
CCAACTGGTTGACGATCCTTCGGTCGATGATTTAATCGCGTGGAACAGCG
ACGGATCGACCTTCATAGTCTGGAGACCAGCGGAATTCGCCAGAGATTTG
TTGCCGAAATATTTTAAACACAACAATTTCTCTAGCTTCGTCCGCCAGCT
CAACACTTACGGATTTAGGAAAGTAGTTCCGGAT
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