FC924929

Overview
NameFC924929
Unique NameFC924929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSFA2_ARATH (Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.165e-22
Identity = 44/85 (51.76%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  380 TSESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            +S SP        + P PFLTKTY++V+DP+ D +++W++  ++F+VW   +F+  LLP+YFKH+NFSSF+RQLNTYGFRK+ PD
Sbjct:   27 SSSSPRPMEGLNETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPD 111          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.746e-22
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  353 IDPMAPVEQTSESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            + P  P+E   + P         LP PFL+KTY LV +P +D +I+W   G++F+VW P+ FARD+LP +FKHNNFSSFVRQLNTYGFRKV  D
Sbjct:   50 MQPPRPLEALLQGP--------QLP-PFLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHAD 134          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.746e-22
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  425 PTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            P PFLTKTY +VDD   D  ++W++  ++F+VW P  FA  LLP++FKHNNFSSFVRQLNTYGFRKV PD
Sbjct:   50 PPPFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPD 119          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFA2A_ORYSJ (Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.811e-22
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  425 PTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            P PFL KTY++VDDP  D +I+W   G++F+VW    FA  LLP+YFKH+NFSSFVRQLNTYGFRKV PD
Sbjct:   51 PPPFLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPD 120          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFA7B_ARATH (Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.503e-21
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  353 IDPMAPVEQTSESPATGGDS-QRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKV 625
            +DP +     S  P    +  Q + P+PFLTKT+++V DP+ + +++WN  G +F+VW P  F+  +LP YFKHNNFSSFVRQLNTYGFRK+
Sbjct:    1 MDPSSSSRARSMPPPVPMEGLQEAGPSPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKI 92          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.348e-21
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  425 PTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            P PFLTKTY LV+D   + +++W+   ++FIVW P  F+  LLP++FKHNNFSSFVRQLNTYGFRKV PD
Sbjct:   59 PPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPD 128          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFA7A_ARATH (Heat stress transcription factor A-7a OS=Arabidopsis thaliana GN=HSFA7A PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  350 GIDPMAPVEQTSESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKV 625
            G DP  P +     P  G     + P PFLTKT+++VDDP+ D +++WN  G++F+VW    F+  LLP++FKH+NFSSF+RQLNTYGFRK+
Sbjct:    9 GCDPPPPPQ-----PMEG--LHENAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKHSNFSSFIRQLNTYGFRKI 93          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSFC1_ARATH (Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 2
Query:  386 ESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            E   +  ++  ++  PF+ KTYQ+V+DPS D LI W    ++FIV  P +F++ +LP YFKHNNFSSFVRQLNTYGFRKV PD
Sbjct:    2 EDDNSNNNNNNNVIAPFIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPD 84          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = 2
Query:  425 PTPFLTKTYQLVDDPSVDDLIAWN-SDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            P PFL KTY++VDDPS D +++W+ +  ++F+VW   EFA  LLP YFKH+NFSSF+RQLNTYGFRK+ P+
Sbjct:   19 PAPFLLKTYEMVDDPSTDAVVSWSDASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPE 89          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 42/70 (60.00%), Postives = 58/70 (82.86%), Query Frame = 2
Query:  425 PTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            P PFL+KTY++V+D S D +I+W++  ++FIVW   +F+  LLP++FKH+NFSSF+RQLNTYGFRKV PD
Sbjct:   29 PPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFRKVDPD 98          
The following BLAST results are available for this feature:
BLAST of FC924929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HSFA2_ARATH5.165e-2251.76Heat stress transcription factor A-2 OS=Arabidopsi... [more]
HSFA3_ORYSJ6.746e-2254.26Heat stress transcription factor A-3 OS=Oryza sati... [more]
HFA2B_ORYSJ6.746e-2264.29Heat stress transcription factor A-2b OS=Oryza sat... [more]
HFA2A_ORYSJ8.811e-2265.71Heat stress transcription factor A-2a OS=Oryza sat... [more]
HFA7B_ARATH1.503e-2150.00Heat stress transcription factor A-7b OS=Arabidops... [more]
HFA6B_ARATH3.348e-2162.86Heat stress transcription factor A-6b OS=Arabidops... [more]
HFA7A_ARATH5.711e-2150.00Heat stress transcription factor A-7a OS=Arabidops... [more]
HSFC1_ARATH9.742e-2155.42Heat stress transcription factor C-1 OS=Arabidopsi... [more]
HSFA5_ORYSJ9.742e-2160.56Heat stress transcription factor A-5 OS=Oryza sati... [more]
HSF30_SOLPE1.272e-2060.00Heat shock factor protein HSF30 OS=Solanum peruvia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM10FM1 TF Citrus clementina cDNA clone KN0AAP1YM10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924929 ID=FC924929; Name=FC924929; organism=Citrus clementina; type=EST; length=634bp
TCATTTACTCCACTCAGAACCTTCTAGAAACAACAAAACCTAACCCAACC
CAACCCAACACAACACATGCGAACTCATCTCTCTCTAGCTCCCTCCCTCC
CTCCCTCCCTCGCATGCTCACCGTTTGAGGTCATCCATCATTTCTGAACC
TCCTGGTTTTCAACTTTCAACGGCGTCTGATCGAGTTCCAACTTTCAACG
CTGCACGTTGAACAGTGGTTTATTCTTCGCTTGTTAGGTTTGGTGAGAAA
ATAATCAAAATTCCTCTTCATTACCCAACGTACAGATTGAGCGTTAGCAA
TTAGCAGAAGCGAAGAGAGAGTTGCAGGATTGATAGGGTTGGGATCTGAG
GTATTGACCCGATGGCTCCGGTTGAGCAGACGAGCGAATCTCCTGCAACA
GGAGGAGACTCGCAGAGATCTCTTCCGACGCCGTTTTTGACCAAAACTTA
CCAACTGGTTGACGATCCTTCGGTCGATGATTTAATCGCGTGGAACAGCG
ACGGATCGACCTTCATAGTCTGGAGACCAGCGGAATTCGCCAGAGATTTG
TTGCCGAAATATTTTAAACACAACAATTTCTCTAGCTTCGTCCGCCAGCT
CAACACTTACGGATTTAGGAAAGTAGTTCCGGAT
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