FC924929

Overview
NameFC924929
Unique NameFC924929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSF2_MOUSE (Heat shock factor protein 2 OS=Mus musculus GN=Hsf2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  413 QRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVV 628
            Q S    FL+K + LV++   ++ I W+ +G +F+V     FA+++LPKYFKHNN +SFVRQLN YGFRKVV
Sbjct:    3 QSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVV 74          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSF2_HUMAN (Heat shock factor protein 2 OS=Homo sapiens GN=HSF2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  413 QRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVV 628
            Q S    FL+K + LV++   ++ I W+ +G +F+V     FA+++LPKYFKHNN +SFVRQLN YGFRKVV
Sbjct:    3 QSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVV 74          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSF2_CHICK (Heat shock factor protein 2 OS=Gallus gallus GN=HSF2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  374 EQTSESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVV 628
            +Q ++ P   G     +P  FL+K + LV +   + LI W+ +G +F+V     FA+++LPKYFKHNN +SFVRQLN YGFRKVV
Sbjct:    8 QQPAQQPPPAG---AGVPA-FLSKLWALVGEAPSNQLITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVV 88          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSF_DROME (Heat shock factor protein OS=Drosophila melanogaster GN=Hsf PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  434 FLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKV 625
            FL K ++LVDD   + LI W  DG +F++   A+FA++LLP  +KHNN +SF+RQLN YGF K+
Sbjct:   49 FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKI 112          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSF_YEAST (Heat shock factor protein OS=Saccharomyces cerevisiae GN=HSF1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.153e-13
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  410 SQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKV 625
            S +S P  F+ K + +++D S   LI W  DG +FIV    EF   +LPKYFKH+NF+SFVRQLN YG+ KV
Sbjct:  168 SHKSRPA-FVNKLWSMLNDDSNTKLIQWAEDGKSFIVTNREEFVHQILPKYFKHSNFASFVRQLNMYGWHKV 238          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSF_KLULA (Heat shock factor protein OS=Kluyveromyces lactis GN=HSF PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  434 FLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKV 625
            F+ K + +V+D S +  I W++ G + +V     F +++LPKYFKH+NF+SFVRQLN YG+ KV
Sbjct:  197 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKV 260          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: PRR1_SCHPO (Transcription factor prr1 OS=Schizosaccharomyces pombe GN=prr1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  392 PATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKV 625
            P++ G S       F+ K + ++++P    ++ W+  G +FIV    EF + +LP++FKH+NF+SFVRQLN Y F KV
Sbjct:    2 PSSNGSSD------FVRKLFNMLEEPEYRHILRWSDSGDSFIVLDTNEFTKTILPRHFKHSNFASFVRQLNKYDFHKV 73          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: SKN7_YEAST (Transcription factor SKN7 OS=Saccharomyces cerevisiae GN=SKN7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 31/86 (36.05%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  368 PVEQTSESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKV 625
            P   T+ S A  G   ++    F+ K ++++++    D++ W  +G +F+V    +F   +LP +FKH+NF+SFVRQLN Y F KV
Sbjct:   67 PAGNTNISSANAG--AKAPANEFVRKLFRILENNEYPDIVTWTENGKSFVVLDTGKFTTHILPNHFKHSNFASFVRQLNKYDFHKV 150          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: SFL1_YEAST (Flocculation suppression protein OS=Saccharomyces cerevisiae GN=SFL1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 2
Query:  434 FLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            F+ K YQ+++D S+ DLI W   G +F++ +P E     L  YFKH N +SFVRQLN YGF KV  D
Sbjct:   65 FIHKLYQILEDESLHDLIWWTPSGLSFMI-KPVERFSKALATYFKHTNITSFVRQLNIYGFHKVSHD 130          
The following BLAST results are available for this feature:
BLAST of FC924929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HSF2_MOUSE2.745e-1551.39Heat shock factor protein 2 OS=Mus musculus GN=Hsf... [more]
HSF2_HUMAN2.745e-1551.39Heat shock factor protein 2 OS=Homo sapiens GN=HSF... [more]
HSF2_CHICK6.116e-1547.06Heat shock factor protein 2 OS=Gallus gallus GN=HS... [more]
HSF_DROME1.362e-1451.56Heat shock factor protein OS=Drosophila melanogast... [more]
HSF_YEAST1.153e-1351.39Heat shock factor protein OS=Saccharomyces cerevis... [more]
HSF_KLULA8.266e-1246.88Heat shock factor protein OS=Kluyveromyces lactis ... [more]
PRR1_SCHPO1.080e-1139.74Transcription factor prr1 OS=Schizosaccharomyces p... [more]
SKN7_YEAST3.141e-1136.05Transcription factor SKN7 OS=Saccharomyces cerevis... [more]
SFL1_YEAST5.358e-1149.25Flocculation suppression protein OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM10FM1 TF Citrus clementina cDNA clone KN0AAP1YM10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924929 ID=FC924929; Name=FC924929; organism=Citrus clementina; type=EST; length=634bp
TCATTTACTCCACTCAGAACCTTCTAGAAACAACAAAACCTAACCCAACC
CAACCCAACACAACACATGCGAACTCATCTCTCTCTAGCTCCCTCCCTCC
CTCCCTCCCTCGCATGCTCACCGTTTGAGGTCATCCATCATTTCTGAACC
TCCTGGTTTTCAACTTTCAACGGCGTCTGATCGAGTTCCAACTTTCAACG
CTGCACGTTGAACAGTGGTTTATTCTTCGCTTGTTAGGTTTGGTGAGAAA
ATAATCAAAATTCCTCTTCATTACCCAACGTACAGATTGAGCGTTAGCAA
TTAGCAGAAGCGAAGAGAGAGTTGCAGGATTGATAGGGTTGGGATCTGAG
GTATTGACCCGATGGCTCCGGTTGAGCAGACGAGCGAATCTCCTGCAACA
GGAGGAGACTCGCAGAGATCTCTTCCGACGCCGTTTTTGACCAAAACTTA
CCAACTGGTTGACGATCCTTCGGTCGATGATTTAATCGCGTGGAACAGCG
ACGGATCGACCTTCATAGTCTGGAGACCAGCGGAATTCGCCAGAGATTTG
TTGCCGAAATATTTTAAACACAACAATTTCTCTAGCTTCGTCCGCCAGCT
CAACACTTACGGATTTAGGAAAGTAGTTCCGGAT
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