FC924930

Overview
NameFC924930
Unique NameFC924930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length417
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924930 vs. ExPASy Swiss-Prot
Match: CALSB_ARATH (Callose synthase 11 OS=Arabidopsis thaliana GN=CALS11 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.903e-16
Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 2
Query:    2 VYHSFFTKSTQNFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXXPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQLGGIWGSIKTLARGYEIVMGLLPFTHVAFLAWFP 412
            VYH    ++  +  VY  SW  II ++ +       ++R+S    + +R I+ LV                +T  D+L+ +LAF+PTGWGL+ IAQ  KP +    +W ++ ++AR Y++  GL+    VA L+W P
Sbjct: 1601 VYHLRIAENRTSIGVYLISWGCIIGIVAIYITTIYAQKRYSVKEHIKYRFIQFLVILLTVLVVVMMLQFTKLTVVDLLISLLAFVPTGWGLISIAQVLKPFLLSTVVWDTVISVARFYDLFFGLIVMAPVALLSWLP 1737          
BLAST of FC924930 vs. ExPASy Swiss-Prot
Match: CALSA_ARATH (Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 2.480e-14
Identity = 40/137 (29.20%), Postives = 70/137 (51.09%), Query Frame = 2
Query:    2 VYHSFFTKSTQNFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXXPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQLGGIWGSIKTLARGYEIVMGLLPFTHVAFLAWFP 412
            VY    T+   +  +YG SWVV++ ++ L KG++      S  F  L  +   +                 ++  D+  C+L F+PTGW LL +A   K ++++ G+W +++   R Y+  MG+L F+ +A L+WFP
Sbjct: 1760 VYKLDLTRKNTSLALYGYSWVVLVVIVFLFKGVA------SITFIALIVVAIAMTD---------------LSIPDMFACVLGFIPTGWALLSLAITWKQVLRVLGLWETVREFGRIYDAAMGMLIFSPIALLSWFP 1875          
The following BLAST results are available for this feature:
BLAST of FC924930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CALSB_ARATH5.903e-1631.39Callose synthase 11 OS=Arabidopsis thaliana GN=CAL... [more]
CALSA_ARATH2.480e-1429.20Callose synthase 10 OS=Arabidopsis thaliana GN=CAL... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YN22FM1 TF Citrus clementina cDNA clone KN0AAP6YN22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924930 ID=FC924930; Name=FC924930; organism=Citrus clementina; type=EST; length=417bp
CGTTTATCACTCGTTCTTTACCAAGAGTACCCAGAACTTTCTGGTTTATG
GTGCTTCATGGGTTGTGATCATTTTCGTATTGTTGCTGGTGAAGGGAATG
TCTGTTGGAAGGCGACGATTCAGTGCAAATTTCCAGCTTTTGTTTAGAAT
GATTAAGGGTTTGGTATTCATTTCATTTATTACCATCTTCATCATTTTGA
TAGCAATCCCTCATATGACCTTCAAAGATATCTTGCTGTGTATACTTGCC
TTCATGCCAACAGGATGGGGACTACTACTGATCGCACAAGCTTGTAAGCC
ATTGATGCAACTTGGTGGAATTTGGGGATCAATTAAGACACTTGCTCGTG
GTTATGAAATAGTGATGGGATTACTTCCATTCACCCATGTTGCATTCTTG
GCGTGGTTCCCCATTTG
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