FC924931

Overview
NameFC924931
Unique NameFC924931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.577e-12
Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 516
            + KR+ KE K +  +PP   SA P  E++  W   I GP  +P+  G +   + FP +YPFKPP ++  T   R     N  +CL   D   + W+PA +++ +L  + S +T
Sbjct:    6 SQKRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMITPNGR--FACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFMT 116          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.807e-12
Identity = 42/126 (33.33%), Postives = 60/126 (47.62%), Query Frame = 1
Query:  184 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPL 540
            M  K ++ E+ +L+ + P +C       +  H     + P +  Y GG F   I  P  Y   PPKV   TK++ PNI   G ICL +L+E       W+P  T+  V+  + SL TD  N  DPL
Sbjct:   32 MRDKLLVTEVAELEANLPWTCKVHFPDPNKLHCFQLTVSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTGWAPTRTLKDVVWGLNSLFTDLLNFYDPL 157          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UB2J2_MOUSE (Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus GN=Ube2j2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 34/117 (29.06%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 528
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +PY GG +   + FP ++PFKPP +   T   R     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGR--FKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UB2J2_HUMAN (Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 34/117 (29.06%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 528
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +PY GG +   + FP ++PFKPP +   T   R     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGR--FKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UB2J2_BOVIN (Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 34/117 (29.06%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 528
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +PY GG +   + FP ++PFKPP +   T   R     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGR--FKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
The following BLAST results are available for this feature:
BLAST of FC924931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
UBC6_DEBHA4.577e-1232.74Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]
UB2FB_MOUSE7.807e-1233.33NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UB2J2_MOUSE2.271e-1129.06Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus... [more]
UB2J2_HUMAN2.271e-1129.06Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens... [more]
UB2J2_BOVIN2.271e-1129.06Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM11FM1 TF Citrus clementina cDNA clone KN0AAP1YM11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924931 ID=FC924931; Name=FC924931; organism=Citrus clementina; type=EST; length=544bp
GTTGAAGGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGG
CTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCT
CTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTT
GTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAAGCGTAT
TTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCG
CTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGC
CCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTT
TCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGG
TCTTCCGCCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTT
AAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTAT
CTGCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTTGTAC
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