FC924931

Overview
NameFC924931
Unique NameFC924931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 8.245e-54
Identity = 94/119 (78.99%), Postives = 108/119 (90.76%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 543
            +SKRI KEL DL +DPP SCSAGPV +D++HWQA+IMGPSDSPYAGGVF ++IHFP DYPFKPPKV F TK++ PNINS+G+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLV
Sbjct:    3 SSKRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLV 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 5.344e-53
Identity = 93/120 (77.50%), Postives = 107/120 (89.17%), Query Frame = 1
Query:  184 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 543
            M+ KRI KEL DL +DPP+SCSAGPV +D++HWQA+IMGP DSPYAGGVF ++IHFP DYP KPPK+A  TK++ PNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTD NPDDPLV
Sbjct:    1 MSLKRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLV 120          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.008e-51
Identity = 93/120 (77.50%), Postives = 102/120 (85.00%), Query Frame = 1
Query:  184 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 543
            MA KRI KEL DL +DPP  CSAGPV EDMFHWQATIMGP+DSPY GG F +TI FP +YPFKPPKV F T+++ PN+NSNGSICLDIL+ QWSPALTISKVLLSI SLL DPNPDDPLV
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLV 120          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.008e-51
Identity = 93/120 (77.50%), Postives = 102/120 (85.00%), Query Frame = 1
Query:  184 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 543
            MA KRI KEL DL +DPP  CSAGPV EDMFHWQATIMGP+DSPY GG F +TI FP +YPFKPPKV F T+++ PN+NSNGSICLDIL+ QWSPALTISKVLLSI SLL DPNPDDPLV
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLV 120          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.002e-51
Identity = 95/121 (78.51%), Postives = 107/121 (88.43%), Query Frame = 1
Query:  184 MASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 543
            MASKRI +EL+D+Q+ PP +CSAGPVAE D+FHWQATIMGP DSPY+GGVF V+I F  DYPFKPPKV F+TKV+ PNI+S GSICLDILKEQWSPA T SKVLLSICSLLTDPNP+DPLV
Sbjct:    1 MASKRISRELRDMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLV 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.250e-42
Identity = 78/119 (65.55%), Postives = 95/119 (79.83%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 543
            ++KRI KEL ++  DPP +CSAGP  ++++ W +TI+GP  S Y GGVF + IHF P+YPFKPPKV FRT+++  NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV
Sbjct:   87 SAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 205          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.455e-42
Identity = 78/119 (65.55%), Postives = 95/119 (79.83%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 543
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F PDYPFKPPKV FRT+++  NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV
Sbjct:   56 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 174          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.455e-42
Identity = 78/119 (65.55%), Postives = 95/119 (79.83%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 543
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F PDYPFKPPKV FRT+++  NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV
Sbjct:   56 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 174          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.455e-42
Identity = 78/119 (65.55%), Postives = 95/119 (79.83%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 543
            ++KRI KEL D+  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F P+YPFKPPKV FRT+++  NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV
Sbjct:   48 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 166          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.455e-42
Identity = 78/119 (65.55%), Postives = 95/119 (79.83%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 543
            ++KRI KEL D+  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F P+YPFKPPKV FRT+++  NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV
Sbjct:   48 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 166          
The following BLAST results are available for this feature:
BLAST of FC924931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
UBC5_YEAST8.245e-5478.99Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC4_CANAL5.344e-5377.50Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
U2D2B_RAT1.008e-5177.50Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE1.008e-5177.50Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC12_ARATH5.002e-5178.51Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBCD2_DROME3.250e-4265.55Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UB2E2_MOUSE9.455e-4265.55Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN9.455e-4265.55Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UB2E1_MOUSE9.455e-4265.55Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN9.455e-4265.55Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM11FM1 TF Citrus clementina cDNA clone KN0AAP1YM11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924931 ID=FC924931; Name=FC924931; organism=Citrus clementina; type=EST; length=544bp
GTTGAAGGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGG
CTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCT
CTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTT
GTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAAGCGTAT
TTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCG
CTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGC
CCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTT
TCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGG
TCTTCCGCCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTT
AAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTAT
CTGCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTTGTAC
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