FC924931

Overview
NameFC924931
Unique NameFC924931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.850e-29
Identity = 57/117 (48.72%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++F PNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P
Sbjct:    5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.155e-29
Identity = 57/117 (48.72%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A KR++++ K LQ DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++F PNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P
Sbjct:    5 ARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29
Identity = 60/116 (51.72%), Postives = 80/116 (68.97%), Query Frame = 1
Query:  193 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 540
            +RI+KE + L  +P    SA P  ++M ++   I+GP+ SPY GGVF + +  P +YP   PKV F TK++ PNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.045e-28
Identity = 60/116 (51.72%), Postives = 78/116 (67.24%), Query Frame = 1
Query:  193 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 540
            KRI+KE + L  +P    SA P  ++  +++  I GP DSP+ GGVF + +    DYP   PKV F TK++ PNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.671e-28
Identity = 59/116 (50.86%), Postives = 78/116 (67.24%), Query Frame = 1
Query:  193 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 540
            KRI+KE + L  DP    +A P  +++ ++Q TI GP  SPY  G+F + ++ P DYP + PKV F TK++ PNI+  G ICLD+LK  WSPAL I  VLLSI +LL  PNP+DPL
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.556e-28
Identity = 60/119 (50.42%), Postives = 81/119 (68.07%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 540
            A KR+ KE+ D+ K PP+ CSA  V +++  W+AT+ GP  SP+  GVF + I  P DYPFKPP + F TK++ PNI  S+G+IC ++    WSP L I  VL +I S+LTDPNPD+PL
Sbjct:    3 AHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFST-WSPQLKILDVLTTIRSILTDPNPDNPL 120          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.556e-28
Identity = 56/120 (46.67%), Postives = 81/120 (67.50%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLV 543
            +S+R+ KE  DL++ P        V +++FHW  T +GPSDS YAGG F  ++ FP DYPF+PP + F T+++ PN +S G++CL ILK+Q + P++ +  VL  I  LL +PNPDDPLV
Sbjct:    8 SSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLV 127          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28
Identity = 54/117 (46.15%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F +TI F  +YP KPP V F +K+F PN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P
Sbjct:    5 ARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28
Identity = 54/117 (46.15%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F +TI F  +YP KPP V F +K+F PN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P
Sbjct:    5 ARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28
Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K +Q DPP   SA PVA+++  W A I+GP+D+P+  G F + +HF   YP KPP V F +++F PN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSP 121          
The following BLAST results are available for this feature:
BLAST of FC924931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
UBC1_ARATH1.850e-2948.72Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_MEDSA3.155e-2948.72Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC35_ARATH4.120e-2951.72Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_DICDI2.045e-2851.72Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC13_YEAST2.671e-2850.86Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBCB_DICDI4.556e-2850.42Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC14_SCHPO4.556e-2846.67Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBE2A_MOUSE5.950e-2846.15Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN5.950e-2846.15Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_EMENI5.950e-2844.44Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM11FM1 TF Citrus clementina cDNA clone KN0AAP1YM11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924931 ID=FC924931; Name=FC924931; organism=Citrus clementina; type=EST; length=544bp
GTTGAAGGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGG
CTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCT
CTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTT
GTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAAGCGTAT
TTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCG
CTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGC
CCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTT
TCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGG
TCTTCCGCCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTT
AAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTAT
CTGCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTTGTAC
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