FC924931

Overview
NameFC924931
Unique NameFC924931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28
Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K +Q DPP   SA PVA+++  W A I+GP+D+P+  G F + +HF   YP KPP V F +++F PN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.771e-28
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+F PN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.771e-28
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+F PN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.771e-28
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+F PN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.771e-28
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+F PN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.771e-28
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+F PN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            + KR++++ K L  DPP   S  P A+++  W A I GP+D+P+  G F + + F   YP KPP V F +K+F PN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPNP+ P
Sbjct:    5 SKKRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27
Identity = 50/115 (43.48%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  193 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            +R++++ K LQ+DPP   S  P  +++  W+A I GP ++P+  G F +++ F  +YP KPP V F +K+F PN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P
Sbjct:    7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.731e-27
Identity = 51/117 (43.59%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K +Q DPP   SA P+ +++  W A I+GP+D+P+  G F + + F   YP KPP+V F +++F PN+ +NG +CLDIL+ +WSP   ++ VL SI SLL DPN   P
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.731e-27
Identity = 50/117 (42.74%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K +Q+DPP+  SA P+ +++  W A I+GPSD+P+  G F + + F   YP KPP+V F +++F PN+ ++G +CLDIL+ +WSP   +S +L S+ SLL DPN   P
Sbjct:    5 ARRRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSP 121          
The following BLAST results are available for this feature:
BLAST of FC924931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
UBC2_ASPFU5.950e-2844.44Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBE2B_RAT7.771e-2845.30Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT7.771e-2845.30Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE7.771e-2845.30Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN7.771e-2845.30Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN7.771e-2845.30Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC2_USTMA1.325e-2744.44Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC1_CAEEL1.325e-2743.48Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_TRIHA1.731e-2743.59Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_CANAL1.731e-2742.74Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM11FM1 TF Citrus clementina cDNA clone KN0AAP1YM11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924931 ID=FC924931; Name=FC924931; organism=Citrus clementina; type=EST; length=544bp
GTTGAAGGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGG
CTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCT
CTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTT
GTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAAGCGTAT
TTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCG
CTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGC
CCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTT
TCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGG
TCTTCCGCCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTT
AAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTAT
CTGCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTTGTAC
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