FC924931

Overview
NameFC924931
Unique NameFC924931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.261e-27
Identity = 56/116 (48.28%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  193 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 540
            +RI+KE + L ++P    +A P   +  ++   + GP+DSP+ GGVF + +  P DYP   PKV F TK++ PNI+  G ICLD+LK++WSPAL I  +LLSI +LL+ PNPDDPL
Sbjct:    6 RRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPL 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.261e-27
Identity = 50/117 (42.74%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K +Q+DPP   SA PVA+++  W A I+GP+++P+  G F + + F   YP KPP V F +++F PN+ S+G +CLDIL+ +WSP   ++ +L S+ SLL DPN   P
Sbjct:    5 ARRRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 3.857e-27
Identity = 51/113 (45.13%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPN 525
            A +R++++ K +Q DPP   SA PV +++  W A I+GP+D+P+  G F + +HF   YP KPP V F +++F PN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPN 117          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.857e-27
Identity = 54/117 (46.15%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K LQ DPP   S  P+  ++  WQA I GP DS + G  F +++ F  +YP   P V F +K+F PN+ ++GSICLDIL+ QWSP   I+ +L SI SLL DPNP+ P
Sbjct:    5 ARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 56/116 (48.28%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  193 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 540
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++ PN++ +G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 51/117 (43.59%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K +Q+DPP   SA PV++++  W A I+GP+D+P+  G F + + F   YP KPP V F + +F PN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPN   P
Sbjct:    5 ARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 50/117 (42.74%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K +++D P   SA P+ +++  W A I+GP+D+PY  G F + + F  DYP KPP V F +++F PN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  190 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            S+RI KEL D+Q+D         + +D+ H +    GP  +PY GG F+V I  P DYPF+PPK+ F TK++ PN++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P
Sbjct:    6 SRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNP 122          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  193 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 540
            KRI+KE++ L +DPP    A P  +++ +++ T+ GP  S Y GG F + +  P +YP  PP V F TK++ PN++  G ICL  LK+ WSPAL I  VLLSI +L+  PNPDDPL
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPL 120          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27
Identity = 51/117 (43.59%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K +Q DPP   SA PV +++  W A I+GP+D+P+  G F + + F   YP KPP+V F +++F PN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN   P
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSP 121          
The following BLAST results are available for this feature:
BLAST of FC924931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
UBE2N_DROME2.261e-2748.28Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC2_YARLI2.261e-2742.74Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_NEUCR3.857e-2745.13Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_DICDI3.857e-2746.15Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBE2N_MACFA5.037e-2748.28Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBC2_SCHPO5.037e-2743.59Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_CANGA5.037e-2742.74Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC1_SCHPO5.037e-2747.01Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC13_SCHPO5.037e-2747.41Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC2_NECHA6.578e-2743.59Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM11FM1 TF Citrus clementina cDNA clone KN0AAP1YM11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924931 ID=FC924931; Name=FC924931; organism=Citrus clementina; type=EST; length=544bp
GTTGAAGGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGG
CTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCT
CTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTT
GTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAAGCGTAT
TTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCG
CTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGC
CCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTT
TCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGG
TCTTCCGCCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTT
AAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTAT
CTGCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTTGTAC
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