FC924931

Overview
NameFC924931
Unique NameFC924931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.914e-26
Identity = 49/117 (41.88%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K +Q+D P+  SA P+ +++  W A I+GP+D+P+  G F + + F   YP KPP V F +++F PN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P
Sbjct:    5 AKRRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.241e-25
Identity = 56/127 (44.09%), Postives = 76/127 (59.84%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPN 525
            A KR+LKEL+ L KD P    AGP +E+ +F W   I GP D+PYA GVF   + FP DYP  PPK+ F   +  PNI  NG +C+ IL             +E+WSP  ++ K+LLS+ S+L++PN
Sbjct:    5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPN 131          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.714e-25
Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 1
Query:  187 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            A +R++++ K L  D P   S  P  +++  W A I GP ++P+  G F +T+ F   YP KPP V F +K+F PNI +NG +CLDIL+ +WSP   ++ +L S+ SLL DPNP  P
Sbjct:    5 AKRRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.050e-24
Identity = 57/116 (49.14%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  196 RILKELKDLQKDPPTS-CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 537
            RI KEL+D +++  +S     P ++++     TI GP  +PY GG F + I  P  YPF+PPK+ F TKV+ PNI+S +G+ICLDILK+QWSPALT+   L+SI +LL+ P P DP
Sbjct:    6 RIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDP 121          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.991e-24
Identity = 58/120 (48.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  196 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLV 543
            R+ +EL+ L K+PP          +M   +A I+G S SPY GG+F + I  P  YPF+PPK+ F T ++ PNI+S G ICLDIL    K  W PAL IS VL SI  L+++PNPDDPL+
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLM 125          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.891e-24
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 1
Query:  196 RILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 540
            R+ KE K++Q++         + +D  +F W A I GPS++PY GGVF +    P  YP +PP+V F TK+F PN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL
Sbjct:    7 RLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.587e-23
Identity = 51/121 (42.15%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  178 RVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 540
            R   SKR+ +EL+ L        +A P  +++F W AT+ GP D+ Y    + +T+ FP DYP+KPP V F T  + PN++ +G+ICLDILKE W+ +  +  +LLS+ SLL +PN   PL
Sbjct:   28 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPL 148          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.378e-23
Identity = 49/132 (37.12%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  178 RVMASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPD 531
            + MA +R++KE K+L ++ P   +AGP  ED  F W   I GP  +P+ GG++  T+ FP DYP  PP + F  + F PN+  +G++C+ IL              E+WSP  ++ K+LLS+ S+L +PN +
Sbjct:    3 KAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDE 134          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.378e-23
Identity = 52/118 (44.07%), Postives = 75/118 (63.56%), Query Frame = 1
Query:  190 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 540
            +KR+  EL  L      S SA PV + D+ +W   I GP D+PY+G  F V++ FP +YPF PP + F + ++ PN++ +G+ICLDILKE+WS    +  +LLS+ SLL +PN   PL
Sbjct:   10 TKRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPL 127          
BLAST of FC924931 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.526e-23
Identity = 51/132 (38.64%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  187 ASKRIL-KELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFRPNINSNGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDP 537
            AS+++L K+LK++QK+PP   S G V +  +F W+  I+GP D+ Y GG F  T+ FP DYP  PPK+ F T+++ PN++ NG +C+ IL              E+W P  +   +L+S+ S+L+ PN + P
Sbjct:    5 ASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESP 136          
The following BLAST results are available for this feature:
BLAST of FC924931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
UBC2_DEBHA1.914e-2641.88Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC7_YEAST1.241e-2544.09Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC2_CRYNE4.714e-2542.74Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC27_ARATH1.050e-2449.14Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBE2T_XENLA3.991e-2448.33Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC21_ARATH8.891e-2444.07Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBE2C_SPISO2.587e-2342.15Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBC7_SCHPO3.378e-2337.12Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC11_YEAST3.378e-2344.07Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC15_SCHPO7.526e-2338.64Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM11FM1 TF Citrus clementina cDNA clone KN0AAP1YM11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924931 ID=FC924931; Name=FC924931; organism=Citrus clementina; type=EST; length=544bp
GTTGAAGGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGG
CTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCT
CTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTT
GTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAAGCGTAT
TTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCG
CTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGC
CCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTT
TCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGG
TCTTCCGCCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTT
AAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTAT
CTGCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTTGTAC
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