FC924938 | Citrus Genome Database

Overview


Name	FC924938
Unique Name	FC924938
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	539

Libraries


Library Name	Type
TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECO57 (Carnitine operon protein caiE OS=Escherichia coli O157:H7 GN=caiE PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.106e-14
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYTDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SHISS (Carnitine operon protein caiE OS=Shigella sonnei (strain Ss046) GN=caiE PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SHIFL (Carnitine operon protein caiE OS=Shigella flexneri GN=caiE PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SHIF8 (Carnitine operon protein caiE OS=Shigella flexneri serotype 5b (strain 8401) GN=caiE PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ESCF3 (Carnitine operon protein caiE OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECOUT (Carnitine operon protein caiE OS=Escherichia coli (strain UTI89 / UPEC) GN=caiE PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECOSM (Carnitine operon protein caiE OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLLVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLU (Carnitine operon protein caiE OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL6 (Carnitine operon protein caiE OS=Escherichia coli O6 GN=caiE PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL5 (Carnitine operon protein caiE OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

The following BLAST results are available for this feature:

BLAST of FC924938 vs. ExPASy Swiss-Prot

BLAST of FC924938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51


Match Name	E-value	Identity	Description
CAIE_ECO57	8.106e-14	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_SHISS	1.383e-13	40.59	Carnitine operon protein caiE OS=Shigella sonnei (...	[more]
CAIE_SHIFL	1.383e-13	40.59	Carnitine operon protein caiE OS=Shigella flexneri...	[more]
CAIE_SHIF8	1.383e-13	40.59	Carnitine operon protein caiE OS=Shigella flexneri...	[more]
CAIE_ESCF3	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia fergu...	[more]
CAIE_ECOUT	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECOSM	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECOLU	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECOL6	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECOL5	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP1YM18FM1 TF Citrus clementina cDNA clone KN0AAP1YM18, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC924938 ID=FC924938; Name=FC924938; organism=Citrus clementina; type=EST; length=539bp
GAGTTGCACGCTTCGCTCGGCCCTTTCATTTCTTCTGTTAAATCGAAGAT
CTTTGAATTTGATTCTGAGCTGACAGCGATGGGAACGCTGGGGAAAGCAA
TATACAGCGTTGGATTCTGGATCCGTGAAACCGGTCAAGCCCTTGATCGT
CTCGGTTGCCGCCTCCAAGGCAACTACTACTTCCAAGAACAACTCTCTAG
GCATCGAACACTCATGAACATTTTTGACAAAGCTCCTGTTGTTGACAAGG
ATGTATTTTTGGCTCCTAGTGCATCCATCATTGGTGATGTTCAGGTGGGC
CGAGGTTCTTCCATTTGGTATGGATGTGTTTTGAGAGGTGATGTTAACAG
CATCAGCATTGGATCTGGAACCAATATACAAGACAATTCCCTTGTTCATG
TGGCAAAATCAAATTTAGCTGGGAAGGTTTTACCTACTATCATTGGAGAT
AATGTTACTGTTGGTCACAGTGCTGTCTTGCATGGATGTACTGTTGAGGA
TGAGGCTTTTGTTGGTATGGGTGCTACTTTGCGGGATGG