FC924938 | Citrus Genome Database

Overview


Name	FC924938
Unique Name	FC924938
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	539

Libraries


Library Name	Type
TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECOK1 (Carnitine operon protein caiE OS=Escherichia coli O1:K1 / APEC GN=caiE PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECOHS (Carnitine operon protein caiE OS=Escherichia coli O9:H4 (strain HS) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECO8A (Carnitine operon protein caiE OS=Escherichia coli O8 (strain IAI1) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECO81 (Carnitine operon protein caiE OS=Escherichia coli O81 (strain ED1a) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECO7I (Carnitine operon protein caiE OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECO55 (Carnitine operon protein caiE OS=Escherichia coli (strain 55989 / EAEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECO45 (Carnitine operon protein caiE OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECO27 (Carnitine operon protein caiE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECO24 (Carnitine operon protein caiE OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLI (Carnitine operon protein caiE OS=Escherichia coli (strain K12) GN=caiE PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.806e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMD 105

The following BLAST results are available for this feature:

BLAST of FC924938 vs. ExPASy Swiss-Prot

BLAST of FC924938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51


Match Name	E-value	Identity	Description
CAIE_ECOK1	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECOHS	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECO8A	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECO81	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECO7I	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECO55	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECO45	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECO27	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECO24	1.383e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECOLI	1.806e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP1YM18FM1 TF Citrus clementina cDNA clone KN0AAP1YM18, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC924938 ID=FC924938; Name=FC924938; organism=Citrus clementina; type=EST; length=539bp
GAGTTGCACGCTTCGCTCGGCCCTTTCATTTCTTCTGTTAAATCGAAGAT
CTTTGAATTTGATTCTGAGCTGACAGCGATGGGAACGCTGGGGAAAGCAA
TATACAGCGTTGGATTCTGGATCCGTGAAACCGGTCAAGCCCTTGATCGT
CTCGGTTGCCGCCTCCAAGGCAACTACTACTTCCAAGAACAACTCTCTAG
GCATCGAACACTCATGAACATTTTTGACAAAGCTCCTGTTGTTGACAAGG
ATGTATTTTTGGCTCCTAGTGCATCCATCATTGGTGATGTTCAGGTGGGC
CGAGGTTCTTCCATTTGGTATGGATGTGTTTTGAGAGGTGATGTTAACAG
CATCAGCATTGGATCTGGAACCAATATACAAGACAATTCCCTTGTTCATG
TGGCAAAATCAAATTTAGCTGGGAAGGTTTTACCTACTATCATTGGAGAT
AATGTTACTGTTGGTCACAGTGCTGTCTTGCATGGATGTACTGTTGAGGA
TGAGGCTTTTGTTGGTATGGGTGCTACTTTGCGGGATGG