FC924938 | Citrus Genome Database

Overview


Name	FC924938
Unique Name	FC924938
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	539

Libraries


Library Name	Type
TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLC (Carnitine operon protein caiE OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.806e-13
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            P+V    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PIVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECODH (Carnitine operon protein caiE OS=Escherichia coli (strain K12 / DH10B) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.806e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECOBW (Carnitine operon protein caiE OS=Escherichia coli (strain K12 / BW2952) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.806e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALTY (Carnitine operon protein caiE OS=Salmonella typhimurium GN=caiE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALTI (Carnitine operon protein caiE OS=Salmonella typhi GN=caiE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALSV (Carnitine operon protein caiE OS=Salmonella schwarzengrund (strain CVM19633) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALPK (Carnitine operon protein caiE OS=Salmonella paratyphi A (strain AKU_12601) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALPC (Carnitine operon protein caiE OS=Salmonella paratyphi C (strain RKS4594) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALPA (Carnitine operon protein caiE OS=Salmonella paratyphi A GN=caiE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105

[Close]

BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALNS (Carnitine operon protein caiE OS=Salmonella newport (strain SL254) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1

Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105

The following BLAST results are available for this feature:

BLAST of FC924938 vs. ExPASy Swiss-Prot

BLAST of FC924938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51


Match Name	E-value	Identity	Description
CAIE_ECOLC	1.806e-13	39.60	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECODH	1.806e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_ECOBW	1.806e-13	40.59	Carnitine operon protein caiE OS=Escherichia coli ...	[more]
CAIE_SALTY	2.358e-13	40.59	Carnitine operon protein caiE OS=Salmonella typhim...	[more]
CAIE_SALTI	2.358e-13	40.59	Carnitine operon protein caiE OS=Salmonella typhi ...	[more]
CAIE_SALSV	2.358e-13	40.59	Carnitine operon protein caiE OS=Salmonella schwar...	[more]
CAIE_SALPK	2.358e-13	40.59	Carnitine operon protein caiE OS=Salmonella paraty...	[more]
CAIE_SALPC	2.358e-13	40.59	Carnitine operon protein caiE OS=Salmonella paraty...	[more]
CAIE_SALPA	2.358e-13	40.59	Carnitine operon protein caiE OS=Salmonella paraty...	[more]
CAIE_SALNS	2.358e-13	40.59	Carnitine operon protein caiE OS=Salmonella newpor...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP1YM18FM1 TF Citrus clementina cDNA clone KN0AAP1YM18, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC924938 ID=FC924938; Name=FC924938; organism=Citrus clementina; type=EST; length=539bp
GAGTTGCACGCTTCGCTCGGCCCTTTCATTTCTTCTGTTAAATCGAAGAT
CTTTGAATTTGATTCTGAGCTGACAGCGATGGGAACGCTGGGGAAAGCAA
TATACAGCGTTGGATTCTGGATCCGTGAAACCGGTCAAGCCCTTGATCGT
CTCGGTTGCCGCCTCCAAGGCAACTACTACTTCCAAGAACAACTCTCTAG
GCATCGAACACTCATGAACATTTTTGACAAAGCTCCTGTTGTTGACAAGG
ATGTATTTTTGGCTCCTAGTGCATCCATCATTGGTGATGTTCAGGTGGGC
CGAGGTTCTTCCATTTGGTATGGATGTGTTTTGAGAGGTGATGTTAACAG
CATCAGCATTGGATCTGGAACCAATATACAAGACAATTCCCTTGTTCATG
TGGCAAAATCAAATTTAGCTGGGAAGGTTTTACCTACTATCATTGGAGAT
AATGTTACTGTTGGTCACAGTGCTGTCTTGCATGGATGTACTGTTGAGGA
TGAGGCTTTTGTTGGTATGGGTGCTACTTTGCGGGATGG