FC924938

Overview
NameFC924938
Unique NameFC924938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALHS (Carnitine operon protein caiE OS=Salmonella heidelberg (strain SL476) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALG2 (Carnitine operon protein caiE OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALEP (Carnitine operon protein caiE OS=Salmonella enteritidis PT4 (strain P125109) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALDC (Carnitine operon protein caiE OS=Salmonella dublin (strain CT_02021853) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALA4 (Carnitine operon protein caiE OS=Salmonella agona (strain SL483) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   79 MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLR 336
            MGTLG+AI++VG  IR T QA  R+G  LQG+++ ++ LSRHRTL+ +             AP+AS+IGDVQ+ +GS I Y  V R
Sbjct:    1 MGTLGRAIHTVGNRIRGTAQAQARVGSLLQGSHHIEKHLSRHRTLITV-------------APNASVIGDVQINKGSFISYASVSR 73          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALCH (Carnitine operon protein caiE OS=Salmonella choleraesuis GN=caiE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD     + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRQILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SHIDS (Carnitine operon protein caiE OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiE PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.529e-12
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IG V VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGYVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_SALPB (Carnitine operon protein caiE OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.608e-12
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+Q   ++H            TI+ +N  +GH A+LHGC V  +A VGM + + D
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQYGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMD 105          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_CITK8 (Carnitine operon protein caiE OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.608e-12
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV  + ++ PSA +IGDV VG G  I     LRGD   + + +G N+QD  ++H            TI+ +N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPEAYVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGANLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVIGRDALVGMNSVIMD 105          
The following BLAST results are available for this feature:
BLAST of FC924938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CAIE_SALHS2.358e-1340.59Carnitine operon protein caiE OS=Salmonella heidel... [more]
CAIE_SALG22.358e-1340.59Carnitine operon protein caiE OS=Salmonella gallin... [more]
CAIE_SALEP2.358e-1340.59Carnitine operon protein caiE OS=Salmonella enteri... [more]
CAIE_SALDC2.358e-1340.59Carnitine operon protein caiE OS=Salmonella dublin... [more]
CAIE_SALA42.358e-1340.59Carnitine operon protein caiE OS=Salmonella agona ... [more]
UMP6_ARATH3.080e-1347.67Uncharacterized protein At1g47420, mitochondrial O... [more]
CAIE_SALCH8.962e-1340.59Carnitine operon protein caiE OS=Salmonella choler... [more]
CAIE_SHIDS1.529e-1239.60Carnitine operon protein caiE OS=Shigella dysenter... [more]
CAIE_SALPB2.608e-1239.60Carnitine operon protein caiE OS=Salmonella paraty... [more]
CAIE_CITK82.608e-1237.62Carnitine operon protein caiE OS=Citrobacter koser... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM18FM1 TF Citrus clementina cDNA clone KN0AAP1YM18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924938 ID=FC924938; Name=FC924938; organism=Citrus clementina; type=EST; length=539bp
GAGTTGCACGCTTCGCTCGGCCCTTTCATTTCTTCTGTTAAATCGAAGAT
CTTTGAATTTGATTCTGAGCTGACAGCGATGGGAACGCTGGGGAAAGCAA
TATACAGCGTTGGATTCTGGATCCGTGAAACCGGTCAAGCCCTTGATCGT
CTCGGTTGCCGCCTCCAAGGCAACTACTACTTCCAAGAACAACTCTCTAG
GCATCGAACACTCATGAACATTTTTGACAAAGCTCCTGTTGTTGACAAGG
ATGTATTTTTGGCTCCTAGTGCATCCATCATTGGTGATGTTCAGGTGGGC
CGAGGTTCTTCCATTTGGTATGGATGTGTTTTGAGAGGTGATGTTAACAG
CATCAGCATTGGATCTGGAACCAATATACAAGACAATTCCCTTGTTCATG
TGGCAAAATCAAATTTAGCTGGGAAGGTTTTACCTACTATCATTGGAGAT
AATGTTACTGTTGGTCACAGTGCTGTCTTGCATGGATGTACTGTTGAGGA
TGAGGCTTTTGTTGGTATGGGTGCTACTTTGCGGGATGG
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