FC924941

Overview
NameFC924941
Unique NameFC924941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.103e-22
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  108 LIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI-EKVLDRGEKI 569
            +IYS VARG+ +LAE+T   GNF +I  + L  +P  + K +Y  + + F+YLV +  TY  +A E  GR+IP  FL+ VK  F   Y G K  TA+A  +N +F   L+  M +   +   +  +++  A++ EVK +++ +I  ++L RGEKI
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKI 155          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 56/156 (35.90%), Postives = 99/156 (63.46%), Query Frame = 3
Query:  105 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPAT-NNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            S++Y+ VARGTV+LAE +  + N ++IA Q L+K+P   ++  +Y+ D + F+    +G T   +A E AGR+IP +FLE + + F + YG     +A A  +N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+ +LDRGE++
Sbjct:    2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDP-NADTISRIKGEMNQVRDVMIENIDNILDRGERL 155          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.474e-22
Identity = 53/155 (34.19%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  105 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R    +FL  VK+ F   Y G +A TA+   +N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERL 154          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.150e-22
Identity = 56/157 (35.67%), Postives = 90/157 (57.32%), Query Frame = 3
Query:  105 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+   +N EF S L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKL 154          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.338e-22
Identity = 52/155 (33.55%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  105 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  VK+ F   Y G +A TA+   +N EF S L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERL 154          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 2.717e-21
Identity = 52/155 (33.55%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  105 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+   +N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERL 154          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.717e-21
Identity = 52/155 (33.55%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  105 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+   +N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERL 154          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 52/155 (33.55%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  105 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY    + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+   +N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERL 154          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.181e-16
Identity = 53/159 (33.33%), Postives = 84/159 (52.83%), Query Frame = 3
Query:   93 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            M Q  ++Y+ V+   V L E+    GNF  +A + + K+P T+ K  Y  + H F+Y+ EN   +  +  E  G QIP  FL  +++ F + YG   +  +     +  F   L+E M+Y   +P+  +K+  V  QVSE KG + + IEK + RGEKI
Sbjct:    1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYD-PFIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKI 155          
The following BLAST results are available for this feature:
BLAST of FC924941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VAM7B_DICDI1.103e-2236.77Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VA712_ARATH3.209e-2235.90Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_MOUSE5.474e-2234.19Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK7.150e-2235.67Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_RAT9.338e-2233.55Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_HUMAN2.717e-2133.55Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN2.717e-2133.55Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB6.052e-2133.55Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI1.181e-1633.33Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM23FM1 TF Citrus clementina cDNA clone KN0AAP1YM23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924941 ID=FC924941; Name=FC924941; organism=Citrus clementina; type=EST; length=575bp
CTCTCTCTAATTTTTGTTTTTTCTGCTCCTCATTTTTTTTTGTCAATTGA
ATCTTTCATCTCGAATTTGAATCTAGGGTTAGGGTTTTGAGGATGGGCCA
ACAGTCGTTGATCTATAGCTTCGTGGCTCGAGGCACGGTGATCCTCGCCG
AGTACACTGAGTTCACCGGTAATTTCACGAGCATCGCATCGCAATGTCTC
CAGAAACTTCCCGCTACCAATAACAAGTTCACCTACAACTGCGATGGCCA
CACCTTCAATTACCTCGTTGAGAACGGCTTCACCTATTGTGTGGTTGCTG
TTGAATCTGCTGGCAGGCAAATTCCAATTGCCTTTCTGGAGCGAGTTAAG
GAGGATTTCAACAAGAGATATGGTGGAGGAAAAGCTGCAACGGCTGTTGC
AAATAACCTGAACAAAGAGTTTGGGTCTAAACTAAAGGAGCACATGCAGT
ATTGTGTGGATCATCCTGAAGAGATCAGCAAGCTTGCCAAAGTCAAAGCT
CAGGTTTCTGAAGTCAAGGGGGTTATGATGGAAAATATTGAGAAGGTTCT
TGATCGTGGTGAGAAGATTTAGCTG
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