FC924949

Overview
NameFC924949
Unique NameFC924949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924949 vs. ExPASy Swiss-Prot
Match: C71BD_ARATH (Cytochrome P450 71B13 OS=Arabidopsis thaliana GN=CYP71B13 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 58/231 (25.11%), Postives = 111/231 (48.05%), Query Frame = 1
Query:   22 RLSRNGKDLIWADYGPHYVKVRKVSTXXXXXXXXXXALRPIREDEVTAMVESIFRDCTNPEKKGQNMKLRDYLSAVSFNNITRLVLGKRFMSPEGVLNEQGIEFKDILGNGVKLGAPVTLAEYTPWLRWMFPLEEEKYVKHNERRDKLTKTIMA--EHTLARQKGGGAAKPHFVDALLNLQE------EYELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRVQQ 690
            R+S N KDL +A Y  ++  VRK++           + R IRE+EV + VE I    +  E     + L   L  +S + I R+  G   ++ EG   E    +++++   +++      ++Y P +  +     ++    + + +K+ K   +  +H +      G +K   VD LL ++       E++ + +   G+L ++++AG+DT+  T+ W M  LIKNPRV +
Sbjct:  104 RISYNLKDLAFAPYSKYWKAVRKMTVVELYTAKRVKSFRNIREEEVASFVEFIKHSASLEEI----VNLNQTLVKLSGSVICRVGFG---INLEGSKLEN--TYEEVIHGTMEVLGSFAASDYFPVIGGII----DRITGLHNKCEKVFKGTDSFFDHCIKHHLEDGGSKDDIVDLLLKVERGEIGLGEFQFTRNHTKGILLDILLAGVDTSGHTITWVMTHLIKNPRVMK 321          
BLAST of FC924949 vs. ExPASy Swiss-Prot
Match: C71AR_ARATH (Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=CYP71A27 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 48/221 (21.72%), Postives = 99/221 (44.80%), Query Frame = 1
Query:   37 GKDLIWADYGPHYVKVRKVSTXXXXXXXXXXALRPIREDEVTAMVESIFRDCTNPEKKGQNMKLRDYLSAVSFNNITRLVLGKRFMSPEGVLNEQGIEFKDILGNGVKLGAPVTLAEYTP---WLRWMFPLEEEKYVKHNERRDKLTKTIMAEHTLARQKGGGAAKPHFVDALLNLQEE----YELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNP 678
            G+D+I+  YG  +  ++ +            +   +RE+E+  M E +            ++ L   L  ++ + I R+ LG+++   EG     GI+ K+++    +        ++ P   W+ W+  + ++K    N + D    +++ EH  A  K        F+D LL +Q++    ++     +I +L +M  +G  TT   +EW M EL+++P
Sbjct:  113 GRDIIFGPYGEDWKSMKSLGVVHLLNNKMVRSFENLREEEIKVMTEKL----EEASSSSSSVNLSKLLMTLTNDIICRITLGRKYNEEEG-----GIDIKNLVMTSSEFFGKFFFGDFIPSLAWIDWISGI-DDKMKDINNKLDCFLDSMVQEHVDADHK----EPSDFIDMLLLIQKDKTKRFKFDRSDLILILKDMFFSGTATTASQLEWTMTELMRHP 319          
BLAST of FC924949 vs. ExPASy Swiss-Prot
Match: C80B1_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment) OS=Eschscholzia californica GN=CYP80B1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 56/214 (26.17%), Postives = 94/214 (43.93%), Query Frame = 1
Query:   46 LIWADYGPHYVKVRKVSTXXXXXXXXXXALRPIREDEVTAMVESIFRDCTNPEKKGQNMKLRDYLSAVSFNNITRLVLGKRFMSPEGVLNEQGIEFKDILGNGVKLGAPVTLAEYTPWLRWMFPLEEEKYVKHNERRD-KLTKTIMAEHTLARQKGGGAAKPHFVDALLNLQEEYELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRV 684
            ++W+D    +  +RKV            +   +RE +   MVE + +      K+G+ +K+ + +     N    L+  +      G  N    EFK+ L   ++LG     A+Y P L       + K V    +    +   ++ E  LA++  G  +K  FVD  L    +  L+D  I  LL  +  AG +T+  T+EWAM EL KNP++
Sbjct:  111 IVWSDCTETWKNLRKVCRTELFTQKMIESQAHVREKKCEEMVEYLMK------KQGEEVKIVEVIFGTLVNIFGNLIFSQNIFEL-GDPNSGSSEFKEYLWRMLELGNSTNPADYFPMLGKFDLFGQRKEVAECLKGIYAIWGAMLQERKLAKKVDGYKSKNDFVDVCL----DSGLNDYQINALLMELFGAGTETSASTIEWAMTELTKNPKI 313          
BLAST of FC924949 vs. ExPASy Swiss-Prot
Match: C71D7_SOLCH (Cytochrome P450 71D7 OS=Solanum chacoense GN=CYP71D7 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 59/239 (24.69%), Postives = 115/239 (48.12%), Query Frame = 1
Query:    7 SRPALR----LSRNGKDLIWADYGPHYVKVRKVSTXXXXXXXXXXALRPIREDEVTAMVESIFRDCTNPEKKGQNMKLRDYLSAVSFNNITRLVLGKRFMSPEGVLNEQGIEFKDILGNGVKLGAPVTLAEYTPWLRWM--FPLEEEKYVKHNERRDKLTKTIMAEH--TLARQKGGGA-AKPHFVDALLNLQEE----YELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRV 684
            SRP L     +  N +D+ ++ YG ++ ++RK+            +   IR DEV  +++SI    T+ E      ++  + S+++     R   G+       VL EQ +  K ++   + L     +A+  P  +++  F   ++K +  + + D + + ++ EH   LA +K   A      VDAL+ L  +    + +++D I  ++ ++  AG +T++ T  WAMAE++KNP V
Sbjct:   98 SRPKLLAMDIICYNRRDIAFSPYGDYWRQMRKICIMEVLSAKSVRSFSSIRHDEVVRLIDSIQPCFTSGELVNFTERIIWFTSSMT----CRSAFGQ-------VLKEQEVFIK-LIREVISLAEGFDVADIFPSYKFLHGFGGAKQKLLNAHRKVDSIVEDVIKEHKKNLATRKSDDAIGGEDLVDALVRLMNDKSLQFPINNDNIKAVIIDLFAAGTETSSTTTVWAMAEMLKNPSV 324          
BLAST of FC924949 vs. ExPASy Swiss-Prot
Match: C71C3_MAIZE (Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 59/229 (25.76%), Postives = 103/229 (44.98%), Query Frame = 1
Query:   25 LSRNGKDLIWADYGPHYVKVRKVSTXXXXXXXXXXALRPIREDEVTAMVESIFRDCTNPEKKGQNMKLRDYLSAVSFNNITRLVLGKRFMSPEGVLNEQGIEFKDILGNGVKLGAPVTLAEYTPWLRW-----MFPLEEEKYVKHNERRDKLTKTIMAEHTLARQKGGGAAKPH--FVDALLNLQEEYELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRVQQ 690
            L  N  D+ ++  G ++ + RK+            + R  RE+EV  +V+++            +M   + L+A + + ++R VLG            +   F+++    V L     L  Y P  RW     +F L   K  +H +R D L + ++ EH   R+  G   K    F+D  L+  EEY  + D +  LL N+  A ++T+ + +E AMAEL+ + RV +
Sbjct:  135 LRYNTCDVAFSPLGEYWQQTRKLMNTHLLSNKKVYSFRHGREEEVCLVVDNLREAAAKSPSTAVDMS--EVLAAYTNDVVSRSVLGSTHRK-----KGRNTLFREMTMTNVDLLVGFNLEYYIP--RWPLTDLLFRLVCWKVTRHLKRWDALLEEVIHEHVEMRKLSGDKEKESDDFIDIFLSRYEEYGFTMDNVKSLLMNVFEAAIETSYLVLESAMAELMNHRRVMK 354          
BLAST of FC924949 vs. ExPASy Swiss-Prot
Match: C71C2_MAIZE (Cytochrome P450 71C2 OS=Zea mays GN=CYP71C2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 65/239 (27.20%), Postives = 111/239 (46.44%), Query Frame = 1
Query:    7 SRP---ALRLSRNG-KDLIWADYGPHYVKVRKVSTXXXXXXXXXXALRPIREDEVTAMVESIFRDCTNPEKKGQNMKLRDYLSAVSFNNITRLVLGKRFMSPEGVLNEQGIE--FKDILGNGVKLGAPVTLAEYTP----WLRWMFPLEEEKYVKHNERRDKLTKTIMAEHTLARQKGGGA-AKPHFVDALLNLQEEYELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRVQQ 690
            SRP   A  + R G  D+ +  YG +  + RK+ T          + R  R++EV  +++ I    T        + L D LS  + + ++R VLG    +       QG    F ++    V L A   L +Y P        +  L   K  + N+R + +   ++ EH  +R  G    ++  F+  LL++Q+EY L+ D +  +L +M  AG++T+ +T+E+ MAELI N  V +
Sbjct:  127 SRPPWMAAEIIRYGPSDVAFVPYGEYGRQGRKLLTTHMLSTKKVQSFRHGRQEEVRLVMDKIRAAATAAPPAA--VDLSDLLSGYTNDVVSRAVLGASHRN-------QGRNRLFSELTEINVSLLAGFNLEDYFPPNMAMADVLLRLVSVKARRLNQRWNDVFDELIQEHVQSRPSGESEESEADFIHVLLSIQQEYGLTTDNLKAILVDMFEAGIETSYLTLEYGMAELINNRHVME 356          
BLAST of FC924949 vs. ExPASy Swiss-Prot
Match: C71AC_ARATH (Cytochrome P450 71A12 OS=Arabidopsis thaliana GN=CYP71A12 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 52/237 (21.94%), Postives = 107/237 (45.15%), Query Frame = 1
Query:    4 RSRPALRLSRNGKDLIWADYGPHYVKVRKVSTXXXXXXXXXXALRPIREDEVTAMVESIFRDCTNPEKKGQNMKLRDYLSAVSFNNITRLVLGKRFMSPEGV--LNEQGIEFKDILGNGVKLGAPVTLAEYTPWLRWMFPLE--EEKYVKHNERRDKLTKTIMAEHTLARQKGGGAAKPHFVDALLNLQEE----YELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRVQQ 690
            RS+    L   G+D+++  YG ++ +++ V            +   IRE+E+  M++ + +  ++   +     L +    +  +  +R+ LG++    E    L ++  +  ++LG          + +Y P L W+  +     +  + ++    L   ++ EH  A     G  K  FVD LL+++ E    ++   D I  ++ +M I G  T++  +EW M ELI+NP V +
Sbjct:  102 RSKAVHGLMNGGRDVVFGPYGEYWRQMKSVCILNLLTNKMVASFEKIREEELNEMIKKLEKASSSSSSEN----LSELFVTLPSDVTSRIALGRKHSEDETARDLKKRVRQIMELLGE-------FPIGDYVPALAWIDRINGFNARIKEVSQGFSDLMDKVVQEHLEA-----GNHKEDFVDILLSIESEKSIGFQAQRDDIKFMILDMFIGGTSTSSTLLEWIMTELIRNPNVMK 322          
The following BLAST results are available for this feature:
BLAST of FC924949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
C71BD_ARATH4.828e-1125.11Cytochrome P450 71B13 OS=Arabidopsis thaliana GN=C... [more]
C71AR_ARATH4.828e-1121.72Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=C... [more]
C80B1_ESCCA6.305e-1126.17(S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (F... [more]
C71D7_SOLCH8.235e-1124.69Cytochrome P450 71D7 OS=Solanum chacoense GN=CYP71... [more]
C71C3_MAIZE8.235e-1125.76Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 S... [more]
C71C2_MAIZE8.235e-1127.20Cytochrome P450 71C2 OS=Zea mays GN=CYP71C2 PE=2 S... [more]
C71AC_ARATH8.235e-1121.94Cytochrome P450 71A12 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YO07FM1 TF Citrus clementina cDNA clone KN0AAP6YO07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924949 ID=FC924949; Name=FC924949; organism=Citrus clementina; type=EST; length=691bp
CGCAGAAGTAGACCTGCTCTTAGGCTTTCTAGAAATGGAAAAGACCTTAT
TTGGGCTGACTATGGTCCTCATTATGTTAAGGTTAGAAAAGTTTCTACTC
TTGAGCTTCTGTCTTCCAAAAAGCTTGAGGCCCTTAGGCCAATTAGGGAA
GATGAAGTCACTGCCATGGTTGAATCCATCTTTAGAGACTGCACTAACCC
AGAGAAAAAGGGGCAGAATATGAAACTGAGGGATTACTTGTCAGCAGTAT
CATTCAACAACATTACAAGACTTGTTCTTGGAAAGCGATTTATGAGCCCA
GAAGGTGTACTGAACGAGCAAGGTATTGAGTTCAAGGACATTCTTGGAAA
TGGAGTCAAGCTCGGGGCTCCTGTAACATTAGCAGAATACACTCCATGGC
TAAGATGGATGTTTCCACTAGAGGAAGAGAAATATGTGAAGCACAATGAA
CGCAGAGATAAGCTTACGAAAACCATAATGGCAGAACATACCCTTGCTCG
TCAAAAGGGTGGAGGAGCTGCTAAGCCACACTTCGTTGATGCGTTGCTCA
ATTTGCAAGAGGAATATGAACTTAGTGATGATACAATTATTGGGCTACTT
TGGAACATGATAATAGCAGGCATGGACACCACAACAATAACTGTAGAATG
GGCCATGGCAGAGCTCATAAAAAACCCTAGAGTGCAACAAA
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