FC924950

Overview
NameFC924950
Unique NameFC924950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:57..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.070e-21
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 3
Query:  129 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 416
            K++AEYIWI G    +RSK  TL    S   +L  WN+DGSSTGQAPG +S+ +L P A++ DPFRRG+NILV+   YT  G P   N R A AK+
Sbjct:   27 KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGSSTGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKL 121          
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.035e-20
Identity = 52/99 (52.53%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  135 IAEYIWIGGSGMDMRSKARTLPGPVSDPSKL---PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG-NNILVMCDAYTPAGEPIPTNKRHAAAKIF 419
            I EY+WIGG+G ++RSK R L   +    KL   P WNYDGSST QA G  SEV LYP+ I++ PFRR  N ++V+CD Y   G P+ TN RH A  IF
Sbjct:   20 IIEYVWIGGNG-ELRSKTRVLYSSIMTGYKLSDIPVWNYDGSSTNQANGSSSEVFLYPRNIYRCPFRRNVNGVIVICDTYDVNGVPLETNHRHNANIIF 117          
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.766e-20
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  132 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 416
            ++AEYIWI     ++RSK +TL    +    LP+WN+DGSST QAPG DS++ L P AI+ DPFRRG+NI+V+ + +   G P   N RH  AK+
Sbjct:   15 VLAEYIWIDAH-FNIRSKCKTLDKKPTSIEDLPEWNFDGSSTDQAPGHDSDIYLRPAAIYPDPFRRGDNIIVLAECWNNDGTPNKFNHRHECAKL 108          
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.953e-19
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  132 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 416
            I+AEY+W+   G   RSK+RTLP     P  LP WN+DGSST QAPG++S+V L P A++ DPFR   NI+V+ + +   G P   N RH   K+
Sbjct:   24 IMAEYVWVDADG-GTRSKSRTLPEKEYKPEDLPVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNADGTPNKYNFRHDCVKV 117          
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.550e-19
Identity = 48/96 (50.00%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  129 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 416
            ++ AEYIWI   G  +RSK  TL    S  + L +WN+DGSST QAP ++S+V L P AIFKDPFR G NILV+C+ Y   G P  +N R    K+
Sbjct:   24 RVQAEYIWIDAEG-GIRSKTMTLDKAPSSVADLKEWNFDGSSTNQAPADNSDVFLRPVAIFKDPFRGGANILVLCECYDNDGTPNKSNYRAHCKKV 118          
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.331e-19
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  129 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 416
            +I+AEY+W+  +G + RSK+RTLP        LP WN+DGSST QAPG++S+V L P A++ DPFR   NI+V+ + +   G P   N RH   K+
Sbjct:   25 QIMAEYVWVDAAG-ETRSKSRTLPEKDYKAEDLPVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNAGGTPNKFNFRHDCVKV 119          
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 3.331e-19
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  126 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 416
            DK+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I
Sbjct:   24 DKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 120          
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 4.350e-19
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  126 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 416
            +K+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKGVEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 120          
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 4.350e-19
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 3
Query:  126 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG-NNILVMCDAYTPAGEPIPTNKRHA 404
            +++ A Y+WI G+G ++R K R L    S    LP W YDGSST QA GE+S+  L P+AI++DPF+ G N+++V+CD Y+  G+P  +NKR A
Sbjct:   60 NRVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDGSSTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNKRAA 153          
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA_SQUAC (Glutamine synthetase, mitochondrial OS=Squalus acanthias PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.682e-19
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  129 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 416
            K+ A YIWI G+G  +R K RTL       ++LP+WN+DGSST Q+ G +S++ L P A+F+DPFRR  N LV+C+      +P  +N RH+  KI
Sbjct:   54 KVQAMYIWIDGTGEAVRCKTRTLDNEPKSIAELPEWNFDGSSTYQSEGSNSDMYLVPSAMFRDPFRRDPNKLVLCEVLKYNRKPAESNLRHSCQKI 149          
The following BLAST results are available for this feature:
BLAST of FC924950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLNA_SCHPO6.070e-2152.08Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA_MIMIV1.035e-2052.53Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA_YARLI1.766e-2048.42Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_GIBFU1.953e-1947.37Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA_CRYNE2.550e-1950.00Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_FUSSH3.331e-1945.83Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_BOVIN3.331e-1945.36Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]
GLNA_CANFA4.350e-1944.33Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA1_DROME4.350e-1946.81Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_SQUAC5.682e-1945.83Glutamine synthetase, mitochondrial OS=Squalus aca... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YO08FM1 TF Citrus clementina cDNA clone KN0AAP6YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924950 ID=FC924950; Name=FC924950; organism=Citrus clementina; type=EST; length=420bp
CATTAACATCCCTTCAATCACAGCAATCTCATTACCAGTTTCTTTGTTGT
GTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCTGCTCTCAGATCTCCT
TAACCTTAACCTCTCAGAATCCACTGACAAGATCATCGCTGAGTACATAT
GGATCGGTGGATCTGGCATGGACATGAGGAGCAAAGCAAGGACTCTTCCC
GGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTGGAATTATGATGGTTC
CAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAGTGATCCTCTATCCTC
AAGCTATTTTCAAGGATCCATTCAGGAGAGGCAACAATATTCTTGTTATG
TGTGATGCTTACACTCCTGCGGGAGAACCAATTCCAACAAACAAAAGACA
TGCAGCTGCCAAGATTTTCA
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