FC924950

Overview
NameFC924950
Unique NameFC924950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:57..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.310e-15
Identity = 43/97 (44.33%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  138 AEYIWIGGS------GM---DMRSKARTLPGPVS-DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKR 398
            AEYIW  G+      GM   +MRSK +    P+  D S+ P W++DGSSTGQA G +S+ IL P  +  DP R   ++LVMC+ + P G+P  TN R
Sbjct:   37 AEYIWADGNEGKPEKGMIFNEMRSKTKCFEAPLGLDASEYPDWSFDGSSTGQAEGNNSDCILRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTR 133          
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  132 IIAEYIWIGGSG--MDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKR 398
            I AEYIWI G+     +RSK + L    SD S+LP+W +DGSST QA G  S+++L P     DP R G+++LV+C+       P P+N R
Sbjct:    3 IKAEYIWIDGTQPTAKLRSKTKIL----SDGSRLPRWGFDGSSTNQAEGHASDLVLEPVFSCPDPIRGGDHLLVLCEVLHTDLTPHPSNTR 89          
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.312e-12
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  138 AEYIWIGGSG--MDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 416
            AEYIWI G+     +RSK + + G  +    LP W +DGSST QA G  S+ +L P     DP R G++ILV+C+       P  +N R A A++
Sbjct:    5 AEYIWIDGTEPTAKLRSKTKIITGQPAGLDALPIWGFDGSSTNQAEGHSSDCVLKPVFTCPDPIRGGDDILVLCEVLNIDLTPHASNTRAALAEV 99          
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 41/92 (44.57%), Postives = 52/92 (56.52%), Query Frame = 3
Query:  138 AEYIWIGGSGMD--MRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAA 407
            AEYIWI G+  +  MRSK R     + D  +   W +DGSST QAPG +S+ +L P     DP R G+N LV+C+       P PTN R AA
Sbjct:    5 AEYIWIDGTEPEPLMRSKTRI----IKDGKEPEIWGFDGSSTNQAPGSNSDCVLRPVFETPDPIRGGDNRLVLCEVQLTDFTP-PTNTRAAA 91          
The following BLAST results are available for this feature:
BLAST of FC924950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLNA2_CHLRE1.310e-1544.33Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA2_STRHY6.084e-1343.96Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_STRVR2.312e-1240.00Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_FRAAL1.499e-1144.57Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YO08FM1 TF Citrus clementina cDNA clone KN0AAP6YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924950 ID=FC924950; Name=FC924950; organism=Citrus clementina; type=EST; length=420bp
CATTAACATCCCTTCAATCACAGCAATCTCATTACCAGTTTCTTTGTTGT
GTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCTGCTCTCAGATCTCCT
TAACCTTAACCTCTCAGAATCCACTGACAAGATCATCGCTGAGTACATAT
GGATCGGTGGATCTGGCATGGACATGAGGAGCAAAGCAAGGACTCTTCCC
GGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTGGAATTATGATGGTTC
CAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAGTGATCCTCTATCCTC
AAGCTATTTTCAAGGATCCATTCAGGAGAGGCAACAATATTCTTGTTATG
TGTGATGCTTACACTCCTGCGGGAGAACCAATTCCAACAAACAAAAGACA
TGCAGCTGCCAAGATTTTCA
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