FC924955

Overview
NameFC924955
Unique NameFC924955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1957 contig Ccv1_Contig1957:23..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 58/208 (27.88%), Postives = 105/208 (50.48%), Query Frame = 3
Query:   69 NVTGRRSRKLVVRTSSLKTPISAKQAE-KNAMQ-YRKLGDSDLVISEITLGT-MTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ--PRDKVIIATKVSGYSERSSFLRDNAKVLR-VDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEG 674
            + TG  +R  + +T S     S +    K  +Q YR LG S L +S + LGT +TFG Q T++ + ++++ A++NGIN+ D++E Y         GK ++ + + +K +   R  ++I TK+        F    A+  R +   +I E ++ SL+RL  +Y+D++  + PD                 P+ P+ E +RA   +I++G
Sbjct:    5 STTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVY-------AAGKAEVVLGNIIKKKGWRRSSLVITTKI--------FWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPD-----------------PNTPMEETVRAMTHVINQG 180          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: KCAB3_RAT (Voltage-gated potassium channel subunit beta-3 OS=Rattus norvegicus GN=Kcnab3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 60/214 (28.04%), Postives = 101/214 (47.20%), Query Frame = 3
Query:   48 HSIQPLSNVTGRRSRKLVV-RTSSLKTPISAKQAEKNAMQYRKLGDSDLVISEITLGT-MTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ--PRDKVIIATKVSGYSERSSFLRDNAKVLR-VDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEG 674
            H   P     G +SR  VV R  +    +         M+YR LG S L +S + LGT +TFG Q +++ + ++L+ A+E+G+N+ D++E Y         GK +  + + LKS+   R   +I TK+        F    A+  R +   +I E ++ SL RL  +Y+D++  +  D                 PS P+ E +RA   +I++G
Sbjct:   40 HGNPPGGGGLGSKSRTAVVPRPPAPAGALRESTGRGTGMKYRNLGKSGLRVSCLGLGTWVTFGSQISDETAEDLLTVAYEHGVNLFDTAEVY-------AAGKAERTLGNILKSKGWRRSSYVITTKI--------FWGGQAETERGLSRKHIIEGLQGSLDRLQLEYVDIVFANRSD-----------------PSSPMEEIVRAMTYVINQG 221          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 58/208 (27.88%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   69 NVTGRRSRKLVVRTSSLKTPISAKQAE-KNAMQ-YRKLGDSDLVISEITLGT-MTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ--PRDKVIIATKVSGYSERSSFLRDNAKVLR-VDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEG 674
            + TG  +R  + +T S     S +    K  +Q YR LG S L +S + LGT +TFG Q T++ +  +++ A++NGIN+ D++E Y         GK ++ + + +K +   R  ++I TK+        F    A+  R +   +I E ++ SL+RL  +Y+D++  + PD                 P+ P+ E +RA   +I++G
Sbjct:    5 STTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVY-------AAGKAEVVLGNIIKKKGWRRSSLVITTKI--------FWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPD-----------------PNTPMEETVRAMTHVINQG 180          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 58/208 (27.88%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   69 NVTGRRSRKLVVRTSSLKTPISAKQAE-KNAMQ-YRKLGDSDLVISEITLGT-MTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ--PRDKVIIATKVSGYSERSSFLRDNAKVLR-VDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEG 674
            + TG  +R  + +T S     S +    K  +Q YR LG S L +S + LGT +TFG Q T++ +  +++ A++NGIN+ D++E Y         GK ++ + + +K +   R  ++I TK+        F    A+  R +   +I E ++ SL+RL  +Y+D++  + PD                 P+ P+ E +RA   +I++G
Sbjct:    5 STTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVY-------AAGKAEVVLGNIIKKKGWRRSSLVITTKI--------FWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPD-----------------PNTPMEETVRAMTHVINQG 180          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 57/207 (27.54%), Postives = 105/207 (50.72%), Query Frame = 3
Query:   84 RSRKLVVRTSSLKTP---ISAKQ--AEKNAMQYRKLGDSDLVISEITLGT-MTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ--PRDKVIIATKV--SGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEG 674
            R+  ++ R+    TP   IS K+  A++  M+YR LG S L +S + LGT +TFG Q +++ + ++++ A+E+G+N+ D++E Y         GK ++ + + LK +   R  ++I TK+   G +E    L            +I E +  SL+RL  +Y+D++  + PD                  + P+ E +RA   +I++G
Sbjct:   41 RTVAIIARSLGTFTPQHHISLKESTAKQTGMKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAEQLMTIAYESGVNLFDTAEVY-------AAGKAEVILGNILKKKGWRRSSLVITTKLYWGGKAETERGL---------SRKHIIEGLRASLQRLQLEYVDVVFANRPDN-----------------NTPMEEIVRAMTHVINQG 214          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 57/207 (27.54%), Postives = 105/207 (50.72%), Query Frame = 3
Query:   84 RSRKLVVRTSSLKTP---ISAKQ--AEKNAMQYRKLGDSDLVISEITLGT-MTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ--PRDKVIIATKV--SGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEG 674
            R+  ++ R+    TP   IS K+  A++  M+YR LG S L +S + LGT +TFG Q +++ +  +++ A+E+G+N+ D++E Y         GK ++ + S +K +   R  ++I TK+   G +E    L            +I E ++ SL+RL  +Y+D++  + PD                  + P+ E +RA   +I++G
Sbjct:   41 RTVAIIARSLGTFTPQHHISLKESTAKQTGMKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVY-------AAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGL---------SRKHIIEGLKGSLQRLQLEYVDVVFANRPD-----------------SNTPMEEIVRAMTHVINQG 214          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: KCAB1_MOUSE (Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 57/207 (27.54%), Postives = 105/207 (50.72%), Query Frame = 3
Query:   84 RSRKLVVRTSSLKTP---ISAKQ--AEKNAMQYRKLGDSDLVISEITLGT-MTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ--PRDKVIIATKV--SGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEG 674
            R+  ++ R+    TP   IS K+  A++  M+YR LG S L +S + LGT +TFG Q +++ +  +++ A+E+G+N+ D++E Y         GK ++ + S +K +   R  ++I TK+   G +E    L            +I E ++ SL+RL  +Y+D++  + PD                  + P+ E +RA   +I++G
Sbjct:   41 RTVAIIARSLGTFTPQHHISLKESTAKQTGMKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVY-------AAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGL---------SRKHIIEGLKGSLQRLQLEYVDVVFANRPD-----------------SNTPMEEIVRAMTHVINQG 214          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: KCAB1_BOVIN (Voltage-gated potassium channel subunit beta-1 OS=Bos taurus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 57/207 (27.54%), Postives = 105/207 (50.72%), Query Frame = 3
Query:   84 RSRKLVVRTSSLKTP---ISAKQ--AEKNAMQYRKLGDSDLVISEITLGT-MTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ--PRDKVIIATKV--SGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEG 674
            R+  ++ R+    TP   IS K+  A++  M+YR LG S L +S + LGT +TFG Q +++ +  +++ A+E+G+N+ D++E Y         GK ++ + S +K +   R  ++I TK+   G +E    L            +I E ++ SL+RL  +Y+D++  + PD                  + P+ E +RA   +I++G
Sbjct:   41 RTVAIIARSLGTFTPQHHISLKESTAKQTGMKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVY-------AAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGL---------SRKHIIEGLKGSLQRLQLEYVDVVFANRPD-----------------SNTPMEEIVRAMTHVINQG 214          
The following BLAST results are available for this feature:
BLAST of FC924955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
KCAB2_BOVIN1.227e-1127.88Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB3_RAT2.093e-1128.04Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB2_RAT2.093e-1127.88Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE2.093e-1127.88Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_CHICK2.093e-1127.54Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RAT3.570e-1127.54Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MOUSE3.570e-1127.54Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_BOVIN3.570e-1127.54Voltage-gated potassium channel subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YO13FM1 TF Citrus clementina cDNA clone KN0AAP6YO13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924955 ID=FC924955; Name=FC924955; organism=Citrus clementina; type=EST; length=680bp
CACATTCACAACCATTCGGTATCATCTCTCAGCTTAAACTAACGCGCCAC
TCGATACAGCCACTGTCAAACGTGACGGGAAGAAGAAGTAGGAAGCTCGT
TGTCAGAACAAGTTCTTTAAAGACGCCCATCAGTGCAAAACAAGCAGAAA
AGAACGCAATGCAGTACAGGAAGCTCGGTGACTCTGATCTTGTTATCAGT
GAAATCACTCTTGGGACTATGACTTTTGGAGAACAAAATACGGAGAAGGA
ATCTCATGAAATTCTTAGTTACGCATTTGAAAACGGCATCAATATTCTTG
ACTCTTCAGAGGCTTACCCCATTCCAATGAAGAAGGAAACACAAGGAAAA
ACAGATCTCTATATTGCTAGCTGGCTGAAGTCTCAGCCCCGTGATAAGGT
TATCATTGCAACAAAAGTTTCTGGTTATTCAGAACGATCAAGTTTTTTGC
GTGACAATGCAAAAGTTTTGCGCGTCGATGCTGCTAACATAAAGGAAAGT
GTAGAGAAAAGCCTAAAACGCCTGAACACAGATTACATCGACTTACTGCA
AATTCACTGGCCAGACCGTTATGTGGCATTATTTGGTGAATACACGTATG
ATTATTCCAAATGGAGGCCAAGCGTGCCAATTGTAGAACAACTGAGGGCA
TTTAAAGAACTTATTGATGAAGGGAAGGTA
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