FC924961

Overview
NameFC924961
Unique NameFC924961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP2A_ANOGA (AP-2 complex subunit alpha OS=Anopheles gambiae GN=alpha-Adaptin PE=3 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 35/130 (26.92%), Postives = 73/130 (56.15%), Query Frame = 1
Query:  283 VKSIGEARSKAEEDRIVLNEIETLKRRIS-EPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPA 669
            +  I   +SK  E + +  E+  ++ +   +  +   + K+Y+ +L+++ +LGHD  FG++ AV +   +    K+ GYL +++ +N + DLI LI+ +I+ DL+S N + V  AL  +  + +++   A
Sbjct:   16 ISDIRNCKSKEAEIKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKYSEKQIGYLFISVLVNTNSDLIKLIIQSIKNDLQSRNPIHVNLALQCIANIGSQDMAEA 145          
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP2A_DROPS (AP-2 complex subunit alpha OS=Drosophila pseudoobscura pseudoobscura GN=alpha-Adaptin PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 34/122 (27.87%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  283 VKSIGEARSKAEEDRIVLNEIETLKRRIS-EPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKL 645
            +  I   +SK  E + +  E+  ++ +   +  +   + K+Y+ +L+++ +LGHD  FG++ AV +   +    K+ GYL +++ +N + DLI LI+ +I+ DL+S N + V  AL  +  +
Sbjct:   16 ISDIRNCKSKEAEVKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKYSEKQIGYLFISVLVNTNSDLIRLIIQSIKNDLQSRNPVHVNLALQCIANI 137          
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP2A_DROME (AP-2 complex subunit alpha OS=Drosophila melanogaster GN=alpha-Adaptin PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 34/122 (27.87%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  283 VKSIGEARSKAEEDRIVLNEIETLKRRIS-EPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKL 645
            +  I   +SK  E + +  E+  ++ +   +  +   + K+Y+ +L+++ +LGHD  FG++ AV +   +    K+ GYL +++ +N + DLI LI+ +I+ DL+S N + V  AL  +  +
Sbjct:   16 ISDIRNCKSKEAEVKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKYSEKQIGYLFISVLVNTNSDLIRLIIQSIKNDLQSRNPVHVNLALQCIANI 137          
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP1G2_MOUSE (AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 41/136 (30.15%), Postives = 69/136 (50.74%), Query Frame = 1
Query:  277 DLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAGLPQV 684
            DL++ I  A ++A+E  ++  E   ++    + D  +R  +  + +L+YV MLG+ A FG +  +K+        KR GYL   L L+E HD  +LI N+I+ DL   N  +   AL  +  + + E      P+V
Sbjct:   10 DLIEEIRGAETQAQEREVIQKECAQIRASFRDGDPLQRHRQ--LAKLLYVHMLGYPAHFGQMECLKLIASPRFTDKRVGYLGAMLLLDERHDSHLLITNSIKNDLSQGNQPVQGLALCTLSTMGSAEMCRDLAPEV 143          
The following BLAST results are available for this feature:
BLAST of FC924961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AP2A_ANOGA2.149e-1126.92AP-2 complex subunit alpha OS=Anopheles gambiae GN... [more]
AP2A_DROPS4.787e-1127.87AP-2 complex subunit alpha OS=Drosophila pseudoobs... [more]
AP2A_DROME4.787e-1127.87AP-2 complex subunit alpha OS=Drosophila melanogas... [more]
AP1G2_MOUSE6.252e-1130.15AP-1 complex subunit gamma-like 2 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN05FM1 TF Citrus clementina cDNA clone KN0AAP1YN05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924961 ID=FC924961; Name=FC924961; organism=Citrus clementina; type=EST; length=689bp
ACAGAAACCTCTCTCCACAATCACACAAATATTTCAGATCTAAATTCTTC
TTCCACGTACACTCAGCTCGACATCAGCACAATCAAAAGAAAACCCTCAT
TAGTCATTACACAATTCACTCCCACAAGAGCAACTAACTTTGAGTACTAT
TACTAATTTTGAAGCTGGAAAAATAATTGATCAAAGCAACAGGCAAAGCT
GGAGCAATTGAAGACAATAGGAAGGGAGCTCGCAATGGGCTCCCAAGGCG
GGTTCGGTCAATCAAAGGAGTTCCTCGACCTCGTCAAATCAATCGGCGAA
GCCCGATCCAAAGCCGAAGAAGACCGAATTGTCCTCAACGAGATCGAGAC
TCTCAAGCGCCGCATCTCCGAACCGGACATCCCCAAGCGCAAGATGAAAG
AGTATATCATTCGTCTCGTCTACGTCGAGATGCTCGGCCACGACGCCTCC
TTTGGCTACATCCACGCCGTCAAGATGACCCACGATGACAATTTGGTCCT
TAAACGAACTGGGTATTTGGCCGTCACTCTGTTCTTGAACGAGGATCATG
ATTTGATCATCTTGATTGTTAATACCATTCAGAAGGACCTCAAATCCGAT
AACTATTTGATCGTTTGCGCCGCGCTTAATGCTGTTTGTAAGTTGATTAA
TGAAGAGACCATCCCTGCGGGTTTGCCGCAGGTTGTTGA
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