FC924966

Overview
NameFC924966
Unique NameFC924966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1805 contig Ccv1_Contig1805:2..448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC924966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
UBIQ_LUPPO1.784e-1169.23Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]
UBIQ_LUPAL1.784e-1169.23Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS1.784e-1169.23Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU1.784e-1169.23Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN1.784e-1169.23Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_EUPEU1.784e-1169.23Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_DESAN1.784e-1169.23Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA1.784e-1169.23Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_CHLRE1.784e-1169.23Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_BRARA1.784e-1169.23Ubiquitin OS=Brassica rapa PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YN09FM1 TF Citrus clementina cDNA clone KN0AAP1YN09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924966 ID=FC924966; Name=FC924966; organism=Citrus clementina; type=EST; length=447bp
ATTTTTCTTCCATTAAAGGCCTCCTAATCTCTCTGTCAAGATCGAGGACA
AGGAAGAGATCCTACGAGACCAGCAGAGGTTCATCTTTGCTGGCAAACGA
CTCGAGGATGGTCGCACACTTGTAGACTACAACATCCACGGGTCAACCCT
TCATTCGGTCCGCCGTTTCAGGGGTGGCATGCAGATATTTGTGAAAACCC
TGACCGGCAAAACATAAATTTGAAGGTCGAAAGCTCTGACACAATCGACA
ATGTCAAGGCTAAGATCCAGGACAAGAAGGGAACTCCACCGGACCAGCAG
AGGCAGATCTTTTGGTTTGTGTTTGGTTGGGGTAGTTTGTGGATGCCTCT
CCTGAGGTTTGACCTTTGACAATGTATCTGGACGTGTATAAGCGTAAAAG
ATGTATCGTGGACGTGTATAAGCGTAGAATATGTAGCTGGACGTGTA
back to top