FC924966

Overview
NameFC924966
Unique NameFC924966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC924966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
UBIQ_RAT3.043e-1169.23Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]
UBIQ_RABIT3.043e-1169.23Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY3.043e-1169.23Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY3.043e-1169.23Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG3.043e-1169.23Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR3.043e-1169.23Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA3.043e-1169.23Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE3.043e-1169.23Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE3.043e-1169.23Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA3.043e-1169.23Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN09FM1 TF Citrus clementina cDNA clone KN0AAP1YN09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924966 ID=FC924966; Name=FC924966; organism=Citrus clementina; type=EST; length=447bp
ATTTTTCTTCCATTAAAGGCCTCCTAATCTCTCTGTCAAGATCGAGGACA
AGGAAGAGATCCTACGAGACCAGCAGAGGTTCATCTTTGCTGGCAAACGA
CTCGAGGATGGTCGCACACTTGTAGACTACAACATCCACGGGTCAACCCT
TCATTCGGTCCGCCGTTTCAGGGGTGGCATGCAGATATTTGTGAAAACCC
TGACCGGCAAAACATAAATTTGAAGGTCGAAAGCTCTGACACAATCGACA
ATGTCAAGGCTAAGATCCAGGACAAGAAGGGAACTCCACCGGACCAGCAG
AGGCAGATCTTTTGGTTTGTGTTTGGTTGGGGTAGTTTGTGGATGCCTCT
CCTGAGGTTTGACCTTTGACAATGTATCTGGACGTGTATAAGCGTAAAAG
ATGTATCGTGGACGTGTATAAGCGTAGAATATGTAGCTGGACGTGTA
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