FC924966

Overview
NameFC924966
Unique NameFC924966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1805 contig Ccv1_Contig1805:2..448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC924966 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   26 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 178
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC924966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
UBIQ_CRIGR3.043e-1169.23Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_COPCO3.043e-1169.23Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_CHICK3.043e-1169.23Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA3.043e-1169.23Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO3.043e-1169.23Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA3.043e-1169.23Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR3.043e-1169.23Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_CAEEL3.043e-1169.23Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_BOVIN3.043e-1169.23Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_AGLNE3.043e-1169.23Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YN09FM1 TF Citrus clementina cDNA clone KN0AAP1YN09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924966 ID=FC924966; Name=FC924966; organism=Citrus clementina; type=EST; length=447bp
ATTTTTCTTCCATTAAAGGCCTCCTAATCTCTCTGTCAAGATCGAGGACA
AGGAAGAGATCCTACGAGACCAGCAGAGGTTCATCTTTGCTGGCAAACGA
CTCGAGGATGGTCGCACACTTGTAGACTACAACATCCACGGGTCAACCCT
TCATTCGGTCCGCCGTTTCAGGGGTGGCATGCAGATATTTGTGAAAACCC
TGACCGGCAAAACATAAATTTGAAGGTCGAAAGCTCTGACACAATCGACA
ATGTCAAGGCTAAGATCCAGGACAAGAAGGGAACTCCACCGGACCAGCAG
AGGCAGATCTTTTGGTTTGTGTTTGGTTGGGGTAGTTTGTGGATGCCTCT
CCTGAGGTTTGACCTTTGACAATGTATCTGGACGTGTATAAGCGTAAAAG
ATGTATCGTGGACGTGTATAAGCGTAGAATATGTAGCTGGACGTGTA
back to top