FC924968

Overview
NameFC924968
Unique NameFC924968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig887 contig Ccv1_Contig887:31..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.518e-29
Identity = 71/122 (58.20%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   97 DPFSSDVWAP----------LGSSS--NEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 426
            DPFS DVW P          L +SS   E S F S ++DWKETPEAHVFKADLPGL          D RVLQISGER+VEKEDKND+W RVE            PENAK+DQVKA+MENGVL
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVL 122          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.589e-29
Identity = 71/160 (44.38%), Postives = 85/160 (53.12%), Query Frame = 1
Query:   70 SIFGNRSVFDPFSSDVWAPLGS--------------------SSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 489
            S+    +VFDPFS D+W P                       +S+E + FA A++DWKETPEAHVFKAD+PGL          DG VLQISGERS E+E+K DKW RVE            PEN K +Q+KASMENGVL               SIQ+TG
Sbjct:    2 SLIRRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.768e-29
Identity = 72/153 (47.06%), Postives = 85/153 (55.56%), Query Frame = 1
Query:   70 SIFGNRSVFDPFSSDVWAPL-------GSSS------NEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 489
            S+    +VFDPFS D+W P        GS S      ++ + FA A++DWKETPEAHVFKAD+PGL          DG VLQISGER  E+E+K DKW RVE            PEN K +Q+KASMENGVL               SIQITG
Sbjct:    2 SMIRRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.768e-29
Identity = 70/149 (46.98%), Postives = 86/149 (57.72%), Query Frame = 1
Query:   70 SIFGNRSVFDPFSSDVWAPL---------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 489
            S+    +VFDPF+ D W P           +S  + + FA+A+VDWKETPE+HVFKADLPG+          +G VL ISG+RS EKEDKNDKW RVE            PENAK+DQVKASMENGVL               +I+I+G
Sbjct:    2 SLVRRSNVFDPFA-DFWDPFDGVFRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.534e-29
Identity = 66/131 (50.38%), Postives = 82/131 (62.60%), Query Frame = 1
Query:   55 MSLIPSIFGNR--SVFDPFSSDVWAPLGS-----SSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 426
            MS+IPS F ++  ++FDPFS D W P         + E +   +A++DWKETPEAHV KADLPG+          DGRVLQISGER  E+E+K+D W RVE            PENAK+D+VKA MENGVL
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIISTEPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVL 131          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.678e-28
Identity = 71/141 (50.35%), Postives = 87/141 (61.70%), Query Frame = 1
Query:   55 MSLIPSIF---GNRS-VFDPFSSD-VWAPL------------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 426
            MSLIP+ +   G RS +FDPFS D +W P               ++ E + FA+A++DWKETPEAHVFKADLPG+          DG VL+ISG+R+ EKE+KND W RVE            PENAK+DQVKA MENGVL
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVL 141          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.678e-28
Identity = 71/160 (44.38%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   70 SIFGNRSVFDPFSSDVWAPL--------GSSS------------NEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 489
            S+    +VFDPFS D+W P         GSSS            +E + FA A++DWKETPEAHVFKAD+PGL          DG +LQISGER+ E+E+K D+W RVE            P+NAK +Q+KASMENGVL               SIQI+G
Sbjct:    2 SLIRRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.739e-28
Identity = 70/158 (44.30%), Postives = 87/158 (55.06%), Query Frame = 1
Query:   70 SIFGNRSVFDPFSSDVWAPL--------GSSSN----------EVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 489
            S+    + FDPFS D+W P+        GSSS+          + + FA A++DWKETPE HVFKAD+PGL          DG +LQISGERS E+E+K+DKW RVE            PEN K +Q+KASMENGVL               SIQI+G
Sbjct:    2 SLIRRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.329e-28
Identity = 68/151 (45.03%), Postives = 86/151 (56.95%), Query Frame = 1
Query:   70 SIFGNRSVFDPFSSDVWAP-----------LGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 489
            SI    +VFDPF+ D+WA            +   S+E + FA+A+VDWKETPEAHVFK DLPG+          DG VL +SGERS EKEDKNDKW RVE            PE+AK+++VKA +ENGVL               +I+I+G
Sbjct:    2 SIVRRSNVFDPFA-DLWADPFDTFRSIVPAISGGSSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.052e-26
Identity = 66/151 (43.71%), Postives = 85/151 (56.29%), Query Frame = 1
Query:   70 SIFGNRSVFDPFSSDVWAP-----------LGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 489
            SI    +VFDPF+ D+WA            +    +E + FA+A++DWKETPEAHVFKADLPG+          DG VL +SGER+ EKEDKNDKW RVE             E+AK+++VKA +ENGVL               +IQI+G
Sbjct:    2 SIVRRTNVFDPFA-DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
The following BLAST results are available for this feature:
BLAST of FC924968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HSP11_MEDSA1.518e-2958.2018.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS181_ORYSJ2.589e-2944.3818.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ5.768e-2947.0617.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ5.768e-2946.9816.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP11_HELAN7.534e-2950.3817.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP11_CHERU1.678e-2850.3518.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS17A_ORYSJ1.678e-2844.3817.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS177_ORYSJ3.739e-2844.3017.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_WHEAT8.329e-2845.0316.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS16B_WHEAT2.052e-2643.7116.9 kDa class I heat shock protein 2 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YO22FM1 TF Citrus clementina cDNA clone KN0AAP6YO22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924968 ID=FC924968; Name=FC924968; organism=Citrus clementina; type=EST; length=739bp
GATAAATAAGCCTTCGATTTCGAAGAAAGTGCTCGTCGCTTTGATTAAGC
AAAAATGTCTTTGATTCCATCTATATTCGGAAACAGGAGCGTGTTCGACC
CATTTTCCTCGGACGTTTGGGCGCCCCTTGGCTCCTCCAGCAATGAGGTG
TCAACATTTGCCAGTGCTCAAGTCGATTGGAAAGAAACCCCGGAAGCTCA
TGTTTTCAAGGCGGATCTTCCGGGGCTCAAGAAAGAGGAAGTGAAGGTTG
AAGTTGAGGACGGGAGAGTCCTTCAGATCAGCGGTGAGAGGAGCGTCGAG
AAGGAAGACAAGAACGACAAATGGCGGCGTGTTGAGAGGGGCCGCGGCAA
GTTCCTGAGGAGGTTCCGGTTGCCTGAGAATGCCAAGATCGATCAAGTTA
AGGCATCAATGGAGAATGGTGTCCTCACCGTCACTGTTCCCAAAGTGGAG
GAGAAGAAGCCTGAGGTCAAATCCATTCAGATCACTGGTTGAAACTCTCC
GTTAATTGCAGCCTTTTTAATTTGGTTCTTGTTTTGTTCTGTGTGTTAAT
GAACGATGTGCGATTGCTGTTAAGTGTGTCGCATACTTTTGTTCATGTAA
TGTGTTGTCGACTGCTTTTTTAAGTAATTTTAAGTAATAAAAATATGTTG
TTTTCTTGGAAGGAGAAATATATTAATTATTAATTCATGTAACCGGGGAC
TTAGCCCATATTTTGGTTGTCCAAATATTGTGATAGTGC
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