FC924968

Overview
NameFC924968
Unique NameFC924968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig887 contig Ccv1_Contig887:31..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 55/136 (40.44%), Postives = 69/136 (50.74%), Query Frame = 1
Query:   49 AKMSLIPSIFGNRSVF---------DPFSSDVWAPLGSSSNEVS-TFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 426
            AK SL+P I    ++          DPF      P G   +E S T + A+VDWKETPE HV   D+PGL          + RVL++SGER  E++ K D W RVE            P+N  +D VKA MENGVL
Sbjct:   26 AKASLLPFIDSPNTLLSDLWSDRFPDPFRVLEQIPYGVEKHEPSITLSHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVL 161          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18
Identity = 49/111 (44.14%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   97 DPFSSDVWAPLGSSSNEVSTFAS-AQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 426
            DPF      P G   +E S   S A+VDWKETPE HV   D+PGL          + RVL++SGER  E+E K D W RVE            P+N  +D VKA +ENGVL
Sbjct:   43 DPFRVLEHIPFGVDKDEASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVL 153          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18
Identity = 60/133 (45.11%), Postives = 72/133 (54.14%), Query Frame = 1
Query:   55 MSLIPSIFGNRSVFDPFSSDVWA---PLG---SSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEK--EDKND-KWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 426
            MSL+ S  GN  V DP S D WA   P G   S +       + +VDWKETP AHVF ADLPG+          DG VL ISGER+ E+  + KND +W  VE            P  A++DQV ASM+NGVL
Sbjct:    1 MSLVRS--GN--VLDPMSVDFWADADPFGAVRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVL 129          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.779e-15
Identity = 43/110 (39.09%), Postives = 56/110 (50.91%), Query Frame = 1
Query:   97 DPFSSDVWAPLGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 426
            DPF      PLG   +     + A+VDWKET E H    D+PGL          +  VL++SGER  E+E K D+W RVE            P+N  ++ VKA +ENGVL
Sbjct:   48 DPFKILERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVL 157          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   49 AKMSLIPSIFGNRSVFDPFSSDVWAPLGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGER----SVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 426
            A+   +P + G  +  DPF      P G   ++V+  + A+VDW+ET +AH    D+PG+          D RVL+ISGER    + E++   D W R E            P+NA +D + AS++NGVL
Sbjct:   38 ARDEAVPEL-GLLAAADPFRILEHVPFGFDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVL 166          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 1
Query:  160 ASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 426
            ++A +DWKET  AHVF AD+PG+          + +VL+ISG+R+   E+K ++W RVE            P NA  D V A+++NGVL
Sbjct:   68 STASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVL 156          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 38/74 (51.35%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  268 VLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 489
            +LQISGER+VEKEDKND W RVE            P+NAK+DQVKASMENGVL               +I+I+G
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of FC924968 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   91 VFDPFSSDVWAPL---GSS-------SNEVSTFASAQVDWKETPEAHVFKADLP-GLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 426
            +FD  + D W P    G++       +++ S FA+  ++ +ET EA+VF+ADLP G+          +G VL I+GERSV +E+K  +   +E            P++A +D V+ASM+ G+L
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGML 128          
The following BLAST results are available for this feature:
BLAST of FC924968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HSP41_PEA9.231e-1940.4422.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP41_SOYBN5.983e-1844.1422.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HS166_ORYSJ5.983e-1845.1116.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_ARATH2.779e-1539.0922.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS232_ORYSJ6.846e-1433.8523.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ5.795e-1340.4518.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP12_SOYBN1.291e-1251.35Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ8.368e-1233.3317.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YO22FM1 TF Citrus clementina cDNA clone KN0AAP6YO22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924968 ID=FC924968; Name=FC924968; organism=Citrus clementina; type=EST; length=739bp
GATAAATAAGCCTTCGATTTCGAAGAAAGTGCTCGTCGCTTTGATTAAGC
AAAAATGTCTTTGATTCCATCTATATTCGGAAACAGGAGCGTGTTCGACC
CATTTTCCTCGGACGTTTGGGCGCCCCTTGGCTCCTCCAGCAATGAGGTG
TCAACATTTGCCAGTGCTCAAGTCGATTGGAAAGAAACCCCGGAAGCTCA
TGTTTTCAAGGCGGATCTTCCGGGGCTCAAGAAAGAGGAAGTGAAGGTTG
AAGTTGAGGACGGGAGAGTCCTTCAGATCAGCGGTGAGAGGAGCGTCGAG
AAGGAAGACAAGAACGACAAATGGCGGCGTGTTGAGAGGGGCCGCGGCAA
GTTCCTGAGGAGGTTCCGGTTGCCTGAGAATGCCAAGATCGATCAAGTTA
AGGCATCAATGGAGAATGGTGTCCTCACCGTCACTGTTCCCAAAGTGGAG
GAGAAGAAGCCTGAGGTCAAATCCATTCAGATCACTGGTTGAAACTCTCC
GTTAATTGCAGCCTTTTTAATTTGGTTCTTGTTTTGTTCTGTGTGTTAAT
GAACGATGTGCGATTGCTGTTAAGTGTGTCGCATACTTTTGTTCATGTAA
TGTGTTGTCGACTGCTTTTTTAAGTAATTTTAAGTAATAAAAATATGTTG
TTTTCTTGGAAGGAGAAATATATTAATTATTAATTCATGTAACCGGGGAC
TTAGCCCATATTTTGGTTGTCCAAATATTGTGATAGTGC
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