FC924969

Overview
NameFC924969
Unique NameFC924969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig887 contig Ccv1_Contig887:44..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924969 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.494e-33
Identity = 78/157 (49.68%), Postives = 94/157 (59.87%), Query Frame = 3
Query:   42 MSLIPSIFGNR--SVFDPFSSDVWAPL----------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 476
            MSLIPSIFG R  +VFDPFS DV+ P            + + +V+ F +A+VDW+ETPEAHVFKADLPGL          DG +LQISGERS E E+KNDKW RVE            PENAK++++KASMENGVL               SI I+G
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of FC924969 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.449e-32
Identity = 78/153 (50.98%), Postives = 89/153 (58.17%), Query Frame = 3
Query:   42 MSLIPSIFGNR---SVFDPFSSDVWAPL-----GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 476
            MS+IPS F N    ++FDPFS DVW P       S S E S   +A+VDW+ETPEAHVFKADLPGL          +  VL+ISGER VEKEDKND W RVE            PEN K+DQVKA+MENGVL               SIQI+G
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of FC924969 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.892e-32
Identity = 74/156 (47.44%), Postives = 92/156 (58.97%), Query Frame = 3
Query:   42 MSLIPSIFGNR--SVFDPFSSDVWAPL---------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 476
            MSL+PS FG R  +VFDPFS DVW P           + + +V+ F +A+VDW+ETPEAHVFKAD+PGL          DG +LQISGERS E E+K+D W RVE            PENAK+++VKASMENGVL               S+ I+G
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of FC924969 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.506e-32
Identity = 78/154 (50.65%), Postives = 89/154 (57.79%), Query Frame = 3
Query:   42 MSLIPSIFGN--RSVFDPFSSDVW-------APLGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 476
            MSLIPSIFG    +VFDPFS D+W        P  S S E S F + +VDWKET EAHV KAD+PGL          D RVLQISGER+VEKEDKND W RV+            PENAK++QVKA MENGVL                I+I+G
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of FC924969 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 76/157 (48.41%), Postives = 93/157 (59.24%), Query Frame = 3
Query:   42 MSLIPSIFGNR--SVFDPFSSDVWAP-----LGSSS-----NEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 476
            MS+IPS FG R  +VFDPFS DVW P     L +SS      E + F +  +DWKETP+AHVFKADLPGL          +G+VLQISGER+ EKE+KNDKW RVE            PENAK+D+VKA+M NGV+               +I I+G
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of FC924969 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 75/134 (55.97%), Postives = 82/134 (61.19%), Query Frame = 3
Query:   42 MSLIPSIFGNR----SVFDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 413
            MSLIPS FGN     S+FDPFS DVW P        S S E S   +A+VDWKET EAHVFKADLPG+          D  VL+ISGER VEKE+K D W RVE            PEN K+DQVKASMENGVL
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVL 134          
BLAST of FC924969 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 75/159 (47.17%), Postives = 93/159 (58.49%), Query Frame = 3
Query:   42 MSLIPSIFGNR--SVFDPFSSDVWAPL---------GSSSN---EVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 476
            MS+IPS FG+R  +V +PFS D+W P          G+SS    E + FA+  +DWKETP+AHVFKADLPGL          +G+VLQISGER+ EKE+KN+KW RVE            PENA +D+VKA MENGVL               SI I+G
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of FC924969 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.569e-31
Identity = 71/149 (47.65%), Postives = 87/149 (58.39%), Query Frame = 3
Query:   57 SIFGNRSVFDPFSSDVWAPLGS---------SSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 476
            S+    +VFDPFS D+W P  S         S N+ + FA+A++DWKETPE+HVFKADLPG+          +G VL ISG+RS EKEDKNDKW RVE            PENAK+DQVKA MENGVL               +I+I+G
Sbjct:    2 SLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of FC924969 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.661e-31
Identity = 74/132 (56.06%), Postives = 83/132 (62.88%), Query Frame = 3
Query:   42 MSLIPSIFGNR-----SVFDPFSSDVWAP---LGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 413
            MSLIPS FGN      ++FDPFS DVW P   L   S+  S  A+A+VDWKET EAHVFKADLPG+          D  VL+ISGER VEKE+K D W RVE            PEN K+DQVKASMENGVL
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVL 132          
BLAST of FC924969 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.951e-31
Identity = 70/149 (46.98%), Postives = 87/149 (58.39%), Query Frame = 3
Query:   57 SIFGNRSVFDPFSSDVWAPLGS---------SSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 476
            S+    +VFDPFS D+W P  S         S N+ + FA+A++DWKETPE+HVFKADLPG+          +G VL ISG+RS EKEDKNDKW RVE            PENAK+DQVKA +ENGVL               +I+I+G
Sbjct:    2 SLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
The following BLAST results are available for this feature:
BLAST of FC924969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HS17C_ARATH8.494e-3349.6817.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS17B_ARATH1.449e-3250.9817.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP17_ARATH1.892e-3247.4417.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP15_SOYBN5.506e-3250.6517.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_DAUCA9.392e-3248.4117.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS178_ARATH9.392e-3255.9717.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP12_DAUCA2.092e-3147.1718.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS16B_ORYSJ3.569e-3147.6516.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS17A_ARATH4.661e-3156.0617.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HS16A_ORYSJ7.951e-3146.9816.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN11FM1 TF Citrus clementina cDNA clone KN0AAP1YN11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924969 ID=FC924969; Name=FC924969; organism=Citrus clementina; type=EST; length=635bp
ACGATTTCGAAGAAAGTGCTCGTCGCTTTGATTAAGCAAAAATGTCTTTG
ATTCCATCTATATTCGGAAACAGGAGCGTGTTCGACCCATTTTCCTCGGA
CGTTTGGGCGCCCCTTGGCTCCTCCAGCAATGAGGTGTCAACATTTGCCA
GTGCTCAAGTCGATTGGAAAGAAACCCCGGAAGCTCATGTTTTCAAGGCG
GATCTTCCGGGGCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTGAGGACGG
GAGAGTCCTTCAGATCAGCGGTGAGAGGAGCGTCGAGAAGGAAGACAAGA
ACGACAAATGGCGGCGTGTTGAGAGGGGCCGCGGCAAGTTCCTGAGGAGG
TTCCGGTTGCCTGAGAATGCCAAGATCGATCAAGTTAAGGCATCAATGGA
GAATGGTGTCCTCACCGTCACTGTTCCCAAAGTGGAGGAGAAGAAGCCTG
AGGTCAAATCCATTCAGATCACTGGTTGAAACTCTCCGTTAATTGCAGCC
TTTTTAATTTGGTTCTTGTTTTGTTCTGTGTGTTAATGAACGATGTGCGA
TTGCTGTTAAGTGTGTCGCATACTTTTGTTCATGTAATGTGTTGTCGACT
GCTTTTTTAAGTAATTTTAAGTAATAAAAATATGT
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