FC924972

Overview
NameFC924972
Unique NameFC924972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:662..1318. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.426e-78
Identity = 144/187 (77.01%), Postives = 161/187 (86.10%), Query Frame = 1 
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA+FQM   TG+ FDDVAG++EAK++  EVV FLK P +F A+GA IPKGVLLVGPPGTGKTLLAKAIAGEA VPFFSISGSEFVEMFVGVGASRVRDLFKKAK+NAPC+VF+DEIDAV           NDEREQTLNQLLTEMDGFEGNTG+IVIAATNR D+LD+ALLRPGRFDRQ+ V +P
Sbjct:  138 KSKARFQMVAKTGIMFDDVAGIEEAKEELAEVVAFLKNPSKFLAVGASIPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKQNAPCLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRVDVLDAALLRPGRFDRQIMVSMP 324
[Close]
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.419e-78
Identity = 144/187 (77.01%), Postives = 162/187 (86.63%), Query Frame = 1 
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA+ QMEP T VTF DVAG+++AK +  EVV+FLK  +RFT +GA+IPKGVLLVGPPGTGKTLLAKA+AGEAGVPFFSISGSEFVEMFVGVGASRVRDLF++AK NAPCIVF+DEIDAV           NDEREQTLNQLLTEMDGFEGNTGII++AATNR D+LDSAL+RPGRFDRQV VD P
Sbjct:  145 KSKARVQMEPQTQVTFGDVAGIEQAKLELTEVVDFLKNADRFTELGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIVAATNRPDVLDSALMRPGRFDRQVVVDRP 331
[Close]
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.476e-75
Identity = 134/187 (71.66%), Postives = 162/187 (86.63%), Query Frame = 1 
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +S A+F+  P+TGV+F D+AG+DEAK +F E+V FLK+P+++T +GA+IPKG+LLVGPPGTGKTLLAKAIA EA VPFFS++GSEFVEMF+G+GA+RVRDLFKKA ENAPCIVF+DEIDAV           NDEREQTLNQLLTEMDGF+ N G+IV+ ATNRADILD+ALLRPGRFDRQVTV++P
Sbjct:  170 KSTARFERRPDTGVSFKDIAGIDEAKTEFEEIVSFLKEPDKYTIVGAKIPKGILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEMFIGIGAARVRDLFKKASENAPCIVFIDEIDAVGRERGAGVGGGNDEREQTLNQLLTEMDGFKENKGVIVVGATNRADILDAALLRPGRFDRQVTVNLP 356
[Close]
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.476e-75
Identity = 138/187 (73.80%), Postives = 159/187 (85.03%), Query Frame = 1 
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SK+KFQ  P TGVTF DVAG D+AK +  EVV+FLK P+++TA+GA+IPKG LLVGPPGTGKTLLA+A+AGEAGVPFFS + SEFVE+FVGVGASRVRDLF+KAK  APCIVF+DEIDAV           NDEREQT+NQLLTEMDGF GN+G+IV+AATNR D+LDSALLRPGRFDRQVTVD P
Sbjct:  234 RSKSKFQEVPETGVTFGDVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRP 420
[Close]
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 1.927e-75
Identity = 138/187 (73.80%), Postives = 159/187 (85.03%), Query Frame = 1 
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SK+KFQ  P TGVTF DVAG D+AK +  EVV+FLK P+++TA+GA+IPKG LLVGPPGTGKTLLA+A+AGEAGVPFFS + SEFVE+FVGVGASRVRDLF+KAK  APCIVF+DEIDAV           NDEREQT+NQLLTEMDGF GN+G+IV+AATNR D+LDSALLRPGRFDRQVTVD P
Sbjct:  237 RSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRP 423
[Close]
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.927e-75
Identity = 138/187 (73.80%), Postives = 157/187 (83.96%), Query Frame = 1 
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            ++KA+F ME  TG+ F+DVAG++EAK++  E+V FLK   +FT +GA IPKGVLLVGPPGTGKTLLAKAIAGEA  PFFSISGSEFVEMFVGVGASRVRDLFKKAKE APCIVF+DEIDAV           NDEREQTLNQLLTEMDGF G+TG+IV+AATNR D+LDSALLRPGRFDRQ+ V +P
Sbjct:  155 KAKARFHMEAKTGIVFEDVAGIEEAKEELQEIVAFLKDSRKFTNVGATIPKGVLLVGPPGTGKTLLAKAIAGEASAPFFSISGSEFVEMFVGVGASRVRDLFKKAKEKAPCIVFIDEIDAVGRQRGVGIGGGNDEREQTLNQLLTEMDGFSGDTGVIVVAATNRIDVLDSALLRPGRFDRQIMVSLP 341
[Close]
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 5.608e-75
Identity = 137/187 (73.26%), Postives = 158/187 (84.49%), Query Frame = 1 
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SK+KFQ  P TGVTF DVAG D+AK +  EVV+FLK P+++TA+GA+IPKG LLVGPPGTGKTLLA+A+AGEAG PFFS + SEFVE+FVGVGASRVRDLF+KAK  APCIVF+DEIDAV           NDEREQT+NQLLTEMDGF GN+G+IV+AATNR D+LDSALLRPGRFDRQVTVD P
Sbjct:  237 RSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRP 423
[Close]
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 5.608e-75
Identity = 137/187 (73.26%), Postives = 159/187 (85.03%), Query Frame = 1 
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SK+KFQ  P TGV+F DVAG D+AK +  EVV+FLK P+++TA+GA+IPKG LLVGPPGTGKTLLA+A+AGEAGVPFFS + SEFVE+FVGVGASRVRDLF+KAK  APCIVF+DEIDAV           NDEREQT+NQLLTEMDGF GN+G+IV+AATNR D+LDSALLRPGRFDRQVTVD P
Sbjct:  246 RSKSKFQEVPETGVSFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRP 432
[Close]
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 9.565e-75
Identity = 137/187 (73.26%), Postives = 159/187 (85.03%), Query Frame = 1 
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SK+KFQ  P TGVTF DVAG D+AK +  EVV+FLK P+++TA+GA+IPKG LLVGPPGTGKTLLA+A+AGEAGVPFFS + SEFVE+FVGVGASRVRDLF+KAK  APCIVF+DEIDAV           NDEREQT+NQLLTEMDGF GN+G+IV+AATNR D+LD+ALLRPGRFDRQVTVD P
Sbjct:  216 RSKSKFQEVPETGVTFVDVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFAGNSGVIVLAATNRPDVLDAALLRPGRFDRQVTVDRP 402
[Close]
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.058e-73
Identity = 135/187 (72.19%), Postives = 157/187 (83.96%), Query Frame = 1 
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SK+KFQ  P TGVTF DVAG D+AK +  EVV+FLK P+++TA+GA+IPKG LLVGPPGTGKTLLA+A+AGEAGVPFFS + SEFVE+FVGVGASRVR LF+ AK  APCIVF+DEIDAV           NDEREQT+NQLLTEMDGF GN+G+IV+AATNR D+LDSALLRPG+FDRQVTVD P
Sbjct:  214 RSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRHLFENAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGKFDRQVTVDRP 400
The following BLAST results are available for this feature:
BLAST of FC924972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
FTSH_CYAME1.426e-7877.01Cell division protease ftsH homolog OS=Cyanidiosch... [more]
FTSH4_SYNY35.419e-7877.01Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FTSH_ODOSI1.476e-7571.66Cell division protease ftsH homolog OS=Odontella s... [more]
FTSH5_ARATH1.476e-7573.80Cell division protease ftsH homolog 5, chloroplast... [more]
FTSH_TOBAC1.927e-7573.80Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_CYACA1.927e-7573.80Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH_MEDSA5.608e-7573.26Cell division protease ftsH homolog, chloroplastic... [more]
FTSH1_ARATH5.608e-7573.26Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH1_ORYSJ9.565e-7573.26Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH_CAPAN1.058e-7372.19Cell division protease ftsH homolog, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN13FM1 TF Citrus clementina cDNA clone KN0AAP1YN13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924972 ID=FC924972; Name=FC924972; organism=Citrus clementina; type=EST; length=657bp
CCACTTATCTTAATTGGAGGGCTGTTCCTTCTCTCAAGGCGTTCATCTGG
TGGAATGGGCGGTCCTGGTGGGCCTGGTTTCCCCCTTGCCTTTGGTCAGT
CCAAAGCTAAATTCCAGATGGAACCAAATACTGGTGTGACATTTGATGAT
GTTGCCGGAGTTGATGAGGCAAAACAAGATTTCATGGAAGTGGTGGAGTT
CCTTAAGAAGCCTGAGAGATTTACTGCTATTGGAGCTCGTATTCCAAAGG
GTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTTCTTGCCAAG
GCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTCCATATCAGGTTCTGA
GTTTGTTGAGATGTTTGTTGGTGTTGGTGCATCTAGAGTCCGAGATCTTT
TCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTATTTGTGGATGAAATT
GATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGGAGGGAATGATGA
AAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAGG
GTAATACTGGTATCATTGTGATTGCTGCAACTAACAGGGCGGACATTCTT
GATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACAGGTTACTGTTGA
TGTTCCT
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