FC924972

Overview
NameFC924972
Unique NameFC924972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:662..1318. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.282e-68
Identity = 123/187 (65.78%), Postives = 149/187 (79.68%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA+   +    +TF DVAG+DEAK++  E+V+FL+ P +F  +G +IPKG LL+GPPGTGKTLLAKAIAGEA VPFFSISGS+FVEMFVGVGASRVRD+F++ K NAPCI+F+DEIDAV           NDEREQTLNQ+L EMDGFE N G+++IAATNR D+LD ALLRPGRFDRQ+ V  P
Sbjct:  139 KSKARLLSDKGPKITFKDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANP 325          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.282e-68
Identity = 123/187 (65.78%), Postives = 149/187 (79.68%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA+   +    +TF DVAG+DEAK++  E+V+FL+ P +F  +G +IPKG LL+GPPGTGKTLLAKAIAGEA VPFFSISGS+FVEMFVGVGASRVRD+F++ K NAPCI+F+DEIDAV           NDEREQTLNQ+L EMDGFE N G+++IAATNR D+LD ALLRPGRFDRQ+ V  P
Sbjct:  139 KSKARLLSDKGPKITFKDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANP 325          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.282e-68
Identity = 123/187 (65.78%), Postives = 149/187 (79.68%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA+   +    +TF DVAG+DEAK++  E+V+FL+ P +F  +G +IPKG LL+GPPGTGKTLLAKAIAGEA VPFFSISGS+FVEMFVGVGASRVRD+F++ K NAPCI+F+DEIDAV           NDEREQTLNQ+L EMDGFE N G+++IAATNR D+LD ALLRPGRFDRQ+ V  P
Sbjct:  139 KSKARLLSDKGPKITFKDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANP 325          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.282e-68
Identity = 123/187 (65.78%), Postives = 149/187 (79.68%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA+   +    +TF DVAG+DEAK++  E+V+FL+ P +F  +G +IPKG LL+GPPGTGKTLLAKAIAGEA VPFFSISGS+FVEMFVGVGASRVRD+F++ K NAPCI+F+DEIDAV           NDEREQTLNQ+L EMDGFE N G+++IAATNR D+LD ALLRPGRFDRQ+ V  P
Sbjct:  139 KSKARLLSDKGPKITFKDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANP 325          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.133e-67
Identity = 125/187 (66.84%), Postives = 152/187 (81.28%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA+   E     TF DVAG DEAK++  E+VE+LK+P RF  +G +IPKG+L+VGPPGTGKTLLAKAIAGEA VPFF+ISGS+FVEMFVGVGASRVRD+F+ A+++APCI+F+DEIDAV           +DEREQTLNQ+L EMDGF+GN G+I+IAATNR D+LD ALLRPGRFDRQV V +P
Sbjct:  136 KSKARMLSEDQIQTTFADVAGCDEAKEEVSELVEYLKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHARKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGVILIAATNRPDVLDPALLRPGRFDRQVIVALP 322          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 1.932e-67
Identity = 124/187 (66.31%), Postives = 152/187 (81.28%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA+   E    +TF DVAG DEAK++  E+VE+LK+P RF  +G +IPKG+L+VGPPGTGKTLLAKAIAGEA VPFF+ISGS+FVEMFVGVGASRVRD+F+ +++ APCI+F+DEIDAV           +DEREQTLNQ+L EMDGF+GN GII+IAATNR D+LD ALLRPGRFDRQ+ V +P
Sbjct:  136 KSKARMLPEDQVKITFSDVAGCDEAKEEVQELVEYLKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHSRKVAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQIFVALP 322          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 1.932e-67
Identity = 125/187 (66.84%), Postives = 152/187 (81.28%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA+   E     TF DVAG DEAK++  E+VE+LK+P RF  +G +IPKG+L+VGPPGTGKTLLAKAIAGEA VPFF+ISGS+FVEMFVGVGASRVRD+F+ ++++APCI+F+DEIDAV           +DEREQTLNQ+L EMDGF+GN GII+IAATNR D+LD ALLRPGRFDRQV V +P
Sbjct:  136 KSKARMLSEDQIQTTFADVAGCDEAKEEVSELVEYLKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHSRKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQVIVALP 322          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.621e-67
Identity = 123/187 (65.78%), Postives = 151/187 (80.75%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +S+AK   +    VTF DVAG DEAK++  E+V+FL+ P +F  +G +IPKG+L+VGPPGTGKTLLA+AIAGEA VPFF+ISGS+FVEMFVGVGASRVRD+F++AK+NAPC++F+DEIDAV           +DEREQTLNQ+L EMDGF GN G+IVIAATNR D+LD AL RPGRFDRQV V +P
Sbjct:  135 KSRAKMLNQDQIKVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKIPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLP 321          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.790e-66
Identity = 133/190 (70.00%), Postives = 154/190 (81.05%), Query Frame = 1
Query:   97 QSKAKFQME-PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKAK  +E  +T VTFDDVAGV+EAK +  EVV+FLK P+R+TA+GA+IPKGVLLVGPPGTGKTLLAKA AGEAGVPFF ISGSEFVE+FVG GA+RVRDLF++AK+ APCIVF+DE+DA+            NDEREQTLNQLLTEMDGF      +IV+AATNR + LD ALLRPGRFDRQV VD P
Sbjct:  157 KSKAKVYVEGDSTKVTFDDVAGVEEAKTELSEVVDFLKFPQRYTALGAKIPKGVLLVGPPGTGKTLLAKAAAGEAGVPFFIISGSEFVELFVGAGAARVRDLFEQAKKQAPCIVFIDELDAIGKSRASGAFMGGNDEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRP 346          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.116e-66
Identity = 125/187 (66.84%), Postives = 149/187 (79.68%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +S+AK   +     TF DVAGVDEA ++  E+ +FL+ P R+ A+GA+IPKGVLL GPPGTGKTLLA+A+AGEAGVPFF+ISGS+FVEMFVGVGASRVRDLF++AK+N+PCI+FVDEIDAV           +DEREQTLNQLL EMDGF    G+I+IAATNR DILD ALLRPGRFDRQ+ V  P
Sbjct:  147 KSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNP 333          
The following BLAST results are available for this feature:
BLAST of FC924972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
FTSH_RICTY2.282e-6865.78Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICPR2.282e-6865.78Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICFE2.282e-6865.78Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICCN2.282e-6865.78Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_BUCAP1.133e-6766.84Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BUCBP1.932e-6766.31Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BUCAI1.932e-6766.84Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH1_HAEIN5.621e-6765.78Cell division protease ftsH homolog 1 OS=Haemophil... [more]
FTSH3_SYNY32.790e-6670.00Cell division protease ftsH homolog 3 OS=Synechocy... [more]
FTSH_MYCTU8.116e-6666.84Cell division protease ftsH homolog OS=Mycobacteri... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN13FM1 TF Citrus clementina cDNA clone KN0AAP1YN13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924972 ID=FC924972; Name=FC924972; organism=Citrus clementina; type=EST; length=657bp
CCACTTATCTTAATTGGAGGGCTGTTCCTTCTCTCAAGGCGTTCATCTGG
TGGAATGGGCGGTCCTGGTGGGCCTGGTTTCCCCCTTGCCTTTGGTCAGT
CCAAAGCTAAATTCCAGATGGAACCAAATACTGGTGTGACATTTGATGAT
GTTGCCGGAGTTGATGAGGCAAAACAAGATTTCATGGAAGTGGTGGAGTT
CCTTAAGAAGCCTGAGAGATTTACTGCTATTGGAGCTCGTATTCCAAAGG
GTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTTCTTGCCAAG
GCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTCCATATCAGGTTCTGA
GTTTGTTGAGATGTTTGTTGGTGTTGGTGCATCTAGAGTCCGAGATCTTT
TCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTATTTGTGGATGAAATT
GATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGGAGGGAATGATGA
AAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAGG
GTAATACTGGTATCATTGTGATTGCTGCAACTAACAGGGCGGACATTCTT
GATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACAGGTTACTGTTGA
TGTTCCT
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