FC924972

Overview
NameFC924972
Unique NameFC924972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:662..1318. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.609e-61
Identity = 117/184 (63.59%), Postives = 140/184 (76.09%), Query Frame = 1
Query:  109 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            K        V F DVAG DEAKQ+ ME V FLK P+++  +GA+IPKG LLVGPPGTGKTLLAKA AGE+GVPF SISGS+F+EMFVGVG SRVR+LF++A++ AP I+F+DEIDA+            NDERE TLNQLL EMDGF   +G++V+A TNR DILD ALLRPGRFDRQ+T+D P
Sbjct:  323 KMDKNSKNKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGSNDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQITIDKP 506          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.861e-61
Identity = 117/175 (66.86%), Postives = 141/175 (80.57%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +TF DVAGVDEAK++  E+VEFLK P+R+  +GAR P+GVLLVG PGTGKTLLAKA+AGE+ VPF S S SEFVE++VG+GASRVRDLF +AK+ AP I+F+DEIDAV            NDEREQTLNQLLTEMDGF+ ++ +IV+ ATNRAD+LD AL RPGRFDR VTV+ P
Sbjct:  326 ITFADVAGVDEAKEELEEIVEFLKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESP 500          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 1.751e-60
Identity = 120/181 (66.30%), Postives = 145/181 (80.11%), Query Frame = 1
Query:  121 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +PN  V F+D+AG +EAK++ +E+V+FLK PER+  +GA+IPKGVLLVGPPGTGKTLLAKA+AGEA VPFFS+ GS F+EMFVG+GASRVRDLF+ AK+ AP I+F+DEIDA+            NDEREQTLNQLL EMDGF   N  +IV+AATNR +ILD AL+RPGRFDRQV VD P
Sbjct:  164 KPN--VRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.751e-60
Identity = 120/181 (66.30%), Postives = 145/181 (80.11%), Query Frame = 1
Query:  121 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +PN  V F+D+AG +EAK++ +E+V+FLK PER+  +GA+IPKGVLLVGPPGTGKTLLAKA+AGEA VPFFS+ GS F+EMFVG+GASRVRDLF+ AK+ AP I+F+DEIDA+            NDEREQTLNQLL EMDGF   N  +IV+AATNR +ILD AL+RPGRFDRQV VD P
Sbjct:  164 KPN--VRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.287e-60
Identity = 118/176 (67.05%), Postives = 142/176 (80.68%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            V F+D+AG +EAK++ +E+V+FLK P+R+ ++GA+IPKGVLLVGPPGTGKTLLAKA+AGEA VPFFS+ GS F+EMFVG+GASRVRDLF  AK+ AP I+F+DEIDA+            NDEREQTLNQLL EMDGF   N  +IV+AATNR +ILD ALLRPGRFDRQV VD P
Sbjct:  173 VRFNDMAGNEEAKEEVVEIVDFLKYPDRYASLGAKIPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEMFVGLGASRVRDLFDIAKKEAPSIIFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALLRPGRFDRQVLVDKP 348          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.987e-60
Identity = 117/175 (66.86%), Postives = 140/175 (80.00%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            VTF DVAGVDEAK++  E+VEFL+ PER+  +GAR P+GVLLVG PGTGKTLLAKA+AGEA VPF S S SEFVE++VG+GA+RVRDLF +AK+ +P I+F+DEIDAV            NDEREQTLNQLLTEMDGF+ N+ +IV+ ATNRAD+LD AL RPGRFDR V V+ P
Sbjct:  343 VTFADVAGVDEAKEELEEIVEFLRNPERYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAARVRDLFARAKKESPSIIFIDEIDAVAKSRDGRYRIVSNDEREQTLNQLLTEMDGFDTNSAVIVLGATNRADVLDPALRRPGRFDRVVMVEAP 517          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.692e-60
Identity = 115/184 (62.50%), Postives = 140/184 (76.09%), Query Frame = 1
Query:  109 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            K        V F DVAG DEAKQ+ ME V FLK P+++  +GA+IPKG LLVGPPGTGKTLLAKA AGE+GVPF SISGS+F+EMFVGVG SRVR+LF++A++ +P IVF+DEIDA+            +DERE TLNQLL EMDGF   +G++V+A TNR DILD ALLRPGRFDRQ+++D P
Sbjct:  308 KLDKNSKNKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCSPSIVFIDEIDAIGRARGRGGFSGGHDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQISIDKP 491          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.529e-59
Identity = 115/190 (60.53%), Postives = 143/190 (75.26%), Query Frame = 1
Query:   97 QSKAK-FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV--XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +S+AK F  E +  ++F +VAG DEAKQ+ ME V FLK P ++T +GA+IP+G +L GPPGTGKTLLAKA AGEA VPF S+SGSEFVEMFVGVGASRVRDLF +A+  AP I+F+DEIDA+             NDERE TLNQLL EMDGF  +  ++V+A TNR D+LD+AL+RPGRFDR + +D P
Sbjct:  271 KSRAKLFNKETDIKISFKNVAGCDEAKQEIMEFVHFLKNPGKYTKLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGALGGANDEREATLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSP 460          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.634e-59
Identity = 112/175 (64.00%), Postives = 137/175 (78.29%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            + F DVAG +EAKQ+ ME V FL+ P+++  +GA+IPKG LLVGPPGTGKTLLAKA AGE+ VPF SISGS+F+EMFVGVG SRVR+LF++A++ AP I+F+DEIDA+            NDERE TLNQLL EMDGF    G++V+A TNR DILD ALLRPGRFDRQ+T+D P
Sbjct:  324 IYFKDVAGCEEAKQEIMEFVHFLQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKP 498          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.062e-57
Identity = 108/174 (62.07%), Postives = 137/174 (78.74%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            VTF+ V GV+EAKQ+  EVVEFLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGEA VPF+  SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V           +    QT+NQLL EMDGF+ N G+I+I ATN  + LD+AL+RPGRFD QVTV  P
Sbjct:  278 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSV--GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRP 449          
The following BLAST results are available for this feature:
BLAST of FC924972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
FTSH8_ORYSJ4.609e-6163.59Cell division protease ftsH homolog 8, mitochondri... [more]
FTSH9_ARATH7.861e-6166.86Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH_HELPY1.751e-6066.30Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELPJ1.751e-6066.30Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELFE2.287e-6067.05Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH7_ORYSJ2.987e-6066.86Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH3_ORYSJ8.692e-6062.50Cell division protease ftsH homolog 3, mitochondri... [more]
AFG3_YEAST2.529e-5960.53Mitochondrial respiratory chain complexes assembly... [more]
FTSHA_ARATH5.634e-5964.00Cell division protease ftsH homolog 10, mitochondr... [more]
YMEL1_MOUSE1.062e-5762.07ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN13FM1 TF Citrus clementina cDNA clone KN0AAP1YN13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924972 ID=FC924972; Name=FC924972; organism=Citrus clementina; type=EST; length=657bp
CCACTTATCTTAATTGGAGGGCTGTTCCTTCTCTCAAGGCGTTCATCTGG
TGGAATGGGCGGTCCTGGTGGGCCTGGTTTCCCCCTTGCCTTTGGTCAGT
CCAAAGCTAAATTCCAGATGGAACCAAATACTGGTGTGACATTTGATGAT
GTTGCCGGAGTTGATGAGGCAAAACAAGATTTCATGGAAGTGGTGGAGTT
CCTTAAGAAGCCTGAGAGATTTACTGCTATTGGAGCTCGTATTCCAAAGG
GTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTTCTTGCCAAG
GCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTCCATATCAGGTTCTGA
GTTTGTTGAGATGTTTGTTGGTGTTGGTGCATCTAGAGTCCGAGATCTTT
TCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTATTTGTGGATGAAATT
GATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGGAGGGAATGATGA
AAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAGG
GTAATACTGGTATCATTGTGATTGCTGCAACTAACAGGGCGGACATTCTT
GATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACAGGTTACTGTTGA
TGTTCCT
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