FC924972

Overview
NameFC924972
Unique NameFC924972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:662..1318. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.062e-57
Identity = 108/174 (62.07%), Postives = 131/174 (75.29%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            V F DVAG +EAK + ME V FLK P+++  +GA+IPKG +L GPPGTGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG +RVRDLF  A++NAPCI+F+DEIDAV             E+E TLNQLL EMDGF   T ++++A TNR DILD ALLRPGRFDRQ+ +  P
Sbjct:  304 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPP 477          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.062e-57
Identity = 108/174 (62.07%), Postives = 131/174 (75.29%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            V F DVAG +EAK + ME V FLK P+++  +GA+IPKG +L GPPGTGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG +RVRDLF  A++NAPCI+F+DEIDAV             E+E TLNQLL EMDGF   T ++++A TNR DILD ALLRPGRFDRQ+ +  P
Sbjct:  305 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPP 478          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.388e-57
Identity = 108/174 (62.07%), Postives = 137/174 (78.74%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            VTF+ V GV+EAKQ+  EVVEFLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGEA VPF+  SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V           +    QT+NQLL EMDGF+ N G+I+I ATN  + LD+AL+RPGRFD QVTV  P
Sbjct:  336 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSV--GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRP 507          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.812e-57
Identity = 107/174 (61.49%), Postives = 131/174 (75.29%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            V F DVAG +EAK + ME V FLK P+++  +GA+IPKG +L GPPGTGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG +RVRDLF  A++NAPCI+F+DEIDAV             E+E TLNQLL EMDGF   T ++++A TNR DILD AL+RPGRFDRQ+ +  P
Sbjct:  306 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPP 479          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.994e-57
Identity = 104/176 (59.09%), Postives = 133/176 (75.57%), Query Frame = 1
Query:  130 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            + V FD++AG+ E K + +E+V++LK P ++  +GAR P+GV+L GPPGTGKTLLAKA+AGEAGVPFF  +GS F +M VGVGA RVRDLF KAK+ APCI+F+DEID+V               EQTLNQLL EMDGF   TG++V+AATNR D+LD ALLRPGRFDR + +++P
Sbjct:  223 SSVRFDNIAGLQEEKHELLEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLP 398          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 107/174 (61.49%), Postives = 136/174 (78.16%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            VTF+ V GV+EAKQ+  EVVEFLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGEA VPF+  SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V           +    QT+ QLL EMDGF+ N G+I+I ATN  + LD+AL+RPGRFD QVTV  P
Sbjct:  278 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSV--GGKRIEFPMHPYSRQTIIQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRP 449          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 104/180 (57.78%), Postives = 134/180 (74.44%), Query Frame = 1
Query:  118 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            ++ N  V F DVAG +EAK + ME V FLK P+++  +GA+IPKG +L GPPGTGKTLLAKA AGEA VPF +++GSEF+EMFVGVG +RVRD+F  A+++APCI+F+DEIDA+             E+E TLNQ+L EMDGF  +T ++V+A TNR DILD AL RPGRFDRQ+ +  P
Sbjct:  291 LKNNIDVRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSSTNVVVLAGTNRPDILDPALTRPGRFDRQIYIGPP 470          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.617e-56
Identity = 113/180 (62.78%), Postives = 134/180 (74.44%), Query Frame = 1
Query:  118 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            ME NT   F DV GVDEAK +  E+V +L+ P+RFT +G ++PKGVLLVGPPGTGKT+LA+AIAGEAGVPFFS SGSEF EMFVGVGA RVRDLF  AK+ +PCI+F+DEIDA+               + TLNQLL E+DGF+ N GIIVIAATN  + LD AL+RPGRFDR + V  P
Sbjct:  223 MESNT--KFSDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFMDEIDAI---GGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNP 397          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.614e-56
Identity = 103/174 (59.20%), Postives = 131/174 (75.29%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            V F ++AG+ E K + +E+V++LK P ++  +GAR P+GV+L GPPGTGKTLLAKA+AGEAGVPFF  +GS F +M VGVGA RVRDLF KAK+ APCI+F+DEID+V               EQTLNQLL EMDGF   TG++V+AATNR D+LD ALLRPGRFDR + +++P
Sbjct:  228 VKFTNIAGLQEEKHELLEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLP 401          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.944e-56
Identity = 111/173 (64.16%), Postives = 129/173 (74.57%), Query Frame = 1
Query:  139 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            TF DV G D+AKQ+  EVVE+LK P +FT +G ++PKG+LL G PGTGKTLLAKAIAGEAGVPFF  +GSEF EMFVGVGA RVR LF+ AK+ APCI+F+DEIDAV               ++TL+QLL EMDGFE N GIIV+AATN  DILD AL RPGRFDR + V  P
Sbjct:  360 TFKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAV----GSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPSP 528          
The following BLAST results are available for this feature:
BLAST of FC924972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
AFG32_MOUSE1.062e-5762.07AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
AFG32_HUMAN1.062e-5762.07AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
YMEL1_HUMAN1.388e-5762.07ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
AFG32_BOVIN1.812e-5761.49AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
FTSH_MYCPN8.994e-5759.09Cell division protease ftsH homolog OS=Mycoplasma ... [more]
YMEL1_RAT1.175e-5661.49ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
AFG31_MOUSE1.175e-5657.78AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
FTSH5_ORYSJ2.617e-5662.78Cell division protease ftsH homolog 5, mitochondri... [more]
FTSH_MYCGE7.614e-5659.20Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSHB_ARATH9.944e-5664.16Cell division protease ftsH homolog 11, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN13FM1 TF Citrus clementina cDNA clone KN0AAP1YN13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924972 ID=FC924972; Name=FC924972; organism=Citrus clementina; type=EST; length=657bp
CCACTTATCTTAATTGGAGGGCTGTTCCTTCTCTCAAGGCGTTCATCTGG
TGGAATGGGCGGTCCTGGTGGGCCTGGTTTCCCCCTTGCCTTTGGTCAGT
CCAAAGCTAAATTCCAGATGGAACCAAATACTGGTGTGACATTTGATGAT
GTTGCCGGAGTTGATGAGGCAAAACAAGATTTCATGGAAGTGGTGGAGTT
CCTTAAGAAGCCTGAGAGATTTACTGCTATTGGAGCTCGTATTCCAAAGG
GTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTTCTTGCCAAG
GCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTCCATATCAGGTTCTGA
GTTTGTTGAGATGTTTGTTGGTGTTGGTGCATCTAGAGTCCGAGATCTTT
TCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTATTTGTGGATGAAATT
GATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGGAGGGAATGATGA
AAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAGG
GTAATACTGGTATCATTGTGATTGCTGCAACTAACAGGGCGGACATTCTT
GATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACAGGTTACTGTTGA
TGTTCCT
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