FC924972

Overview
NameFC924972
Unique NameFC924972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:662..1318. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.299e-55
Identity = 104/176 (59.09%), Postives = 132/176 (75.00%), Query Frame = 1
Query:  130 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            T   F D+AG  E  ++  E+V++LK P+++ A GAR PKG+LL GPPGTGKTLLAKA AGEA VPFF IS S FVE++VG+GA RVR++FK+A++ AP I+F+DE+DAV           NDEREQTLNQ+L EMDG   N GI+++ ATNR D+LD ALLRPGRFDR +TV +P
Sbjct:  207 TDKKFTDIAGNKEPIEEVQELVDYLKNPKKYAAAGARFPKGILLGGPPGTGKTLLAKATAGEANVPFFFISASSFVELYVGLGAKRVREMFKEARKLAPAIIFIDELDAVGRSRGSGIGGGNDEREQTLNQILVEMDGINENAGILIMGATNRTDVLDPALLRPGRFDRIITVGLP 382          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.696e-55
Identity = 108/181 (59.67%), Postives = 133/181 (73.48%), Query Frame = 1
Query:  115 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            Q   ++   F DV GVDEAK +  E+V +L+ P+RFT +G ++PKGVLLVGPPGTGKT+LA+AIAGEAGVPFFS SGSEF EMFVGVGA RVRDLF  AK+ +PCI+F+DEIDA+               + TLNQ+L E+DGF+ N GIIV+AATN  + LD AL+RPGRFDR + V  P
Sbjct:  217 QPSMDSSTKFSDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEIDAI---GGSRNPKDQQYMKMTLNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNP 394          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.893e-55
Identity = 111/173 (64.16%), Postives = 129/173 (74.57%), Query Frame = 1
Query:  139 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            TF DV G D+AK++  EVVE+LK P +FT +G ++PKG+LL G PGTGKTLLAKAIAGEAGVPFF  +GSEF EMFVGVGA RVR LF+ AK+ APCIVF+DEIDAV               ++TL+QLL EMDGFE N GIIV+AATN  DILD AL RPGRFDR + V  P
Sbjct:  326 TFKDVKGCDDAKKELEEVVEYLKNPSKFTRLGGKLPKGILLTGSPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIVFIDEIDAV----GSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPNP 494          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.935e-55
Identity = 108/172 (62.79%), Postives = 128/172 (74.42%), Query Frame = 1
Query:  142 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            F DV GVDEAK +  E+V +L+ P+RFT +G ++PKGVLLVGPPGTGKT+LA+A+AGEAGVPFFS SGSEF EMFVGVGA RVRDLF  AK+ +PCI+F+DEIDA+                 TLNQLL E+DGF+ N GIIVIAATN    LD AL+RPGRFDR + V  P
Sbjct:  222 FSDVKGVDEAKAELEEIVHYLRDPKRFTHLGGKLPKGVLLVGPPGTGKTMLARAVAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFMDEIDAI---GGSRNPKDQQYMRMTLNQLLVELDGFKQNEGIIVIAATNFPQSLDKALVRPGRFDRHIVVPNP 390          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.875e-54
Identity = 105/177 (59.32%), Postives = 132/177 (74.58%), Query Frame = 1
Query:  127 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            NT V+F DV G DE K++ ++VVEFL+ PE+F  IGA++PKGVLLVGPPG GKTLLAKA++GEA VPF   SGS F E+ VG+GASR+R LF  AK+N+PC+VF+DEID+V           +    QT+NQLL EMDGF+   GIIV+ ATN+A++LD ALLRPGRFD Q+ V  P
Sbjct:  160 NTDVSFSDVQGCDEVKKELVDVVEFLRNPEKFNQIGAKLPKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSV--GGNRTFSPHHPFANQTINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPP 334          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.074e-53
Identity = 104/176 (59.09%), Postives = 132/176 (75.00%), Query Frame = 1
Query:  133 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            GV+F DVAG+ EAK +  E V++LK PERF  +GA++PKG LL+GPPG GKTLLAKA+A EA VPF +++G EFVE+  G+GA+RVR LFK+A+  APCIV++DEIDAV            N E EQTLNQLL EMDG      +IV+A+TNRAD+LD+AL+RPGR DR V +D+P
Sbjct:  305 GVSFQDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHVFIDLP 480          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 2.708e-53
Identity = 105/176 (59.66%), Postives = 131/176 (74.43%), Query Frame = 1
Query:  133 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            GV+F DVAG+ EAK +  E V++LK PERF  +GA++PKG LL+GPPG GKTLLAKA+A EA VPF +++G EFVE+  G+GA+RVR LFK+A+  APCIV++DEIDAV            N E EQTLNQLL EMDG      +IV+A+TNRADILD AL+RPGR DR V +D+P
Sbjct:  305 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLP 480          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.537e-53
Identity = 104/176 (59.09%), Postives = 132/176 (75.00%), Query Frame = 1
Query:  133 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            GV+F DVAG+ EAK +  E V++LK PERF  +GA++PKG LL+GPPG GKTLLAKA+A EA VPF +++G EFVE+  G+GA+RVR LFK+A+  APCIV++DEIDAV            N E EQTLNQLL EMDG      +IV+A+TNRAD+LD+AL+RPGR DR V +D+P
Sbjct:  305 GVSFQDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLP 480          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.994e-52
Identity = 106/166 (63.86%), Postives = 126/166 (75.90%), Query Frame = 1
Query:  160 VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +DEAK +  E+V++LK PE+++ +G R+PKGVLLVGPPGTGKTLLA+AIAGEA VPFF  +GSEF E+ VG GA RVRDLF KAK  APCI+F+DEID+V           +    QT+NQLL+EMDGF  N GIIVIAATNR D LD ALLRPGRFD +VTV  P
Sbjct:  206 MDEAKLEVEEIVDYLKDPEKYSRLGGRLPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEVLVGQGARRVRDLFDKAKARAPCIIFIDEIDSV--GSKRVSNSIHPYANQTINQLLSEMDGFTRNEGIIVIAATNRVDDLDKALLRPGRFDVRVTVPKP 369          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.670e-52
Identity = 100/176 (56.82%), Postives = 128/176 (72.73%), Query Frame = 1
Query:  130 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            T V FDDV G DEA+ +  E+V+FLK P ++ ++G ++PKGVLL GPPGTGKTLLA+A AGEAGV FF +SGSEF E++VGVGA R+RDLF +A+  AP I+F+DE+DA+               +QTLNQLL E+DGF   +GII+I ATN  + LD AL RPGRFD+ V VD+P
Sbjct:  276 TNVKFDDVCGCDEARAELEEIVDFLKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQAY---AKQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLP 448          
The following BLAST results are available for this feature:
BLAST of FC924972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
FTSH_MYCPU1.299e-5559.09Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH4_ARATH1.696e-5559.67Cell division protease ftsH homolog 4, mitochondri... [more]
FTSH9_ORYSJ2.893e-5564.16Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH4_ORYSJ4.935e-5562.79Cell division protease ftsH homolog 4, mitochondri... [more]
YME1_SCHMA1.875e-5459.32Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
SPG7_MOUSE2.074e-5359.09Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
SPG7_HUMAN2.708e-5359.66Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
SPG7_RAT3.537e-5359.09Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
YME1_CAEEL2.994e-5263.86Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]
YME1_YEAST6.670e-5256.82Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN13FM1 TF Citrus clementina cDNA clone KN0AAP1YN13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924972 ID=FC924972; Name=FC924972; organism=Citrus clementina; type=EST; length=657bp
CCACTTATCTTAATTGGAGGGCTGTTCCTTCTCTCAAGGCGTTCATCTGG
TGGAATGGGCGGTCCTGGTGGGCCTGGTTTCCCCCTTGCCTTTGGTCAGT
CCAAAGCTAAATTCCAGATGGAACCAAATACTGGTGTGACATTTGATGAT
GTTGCCGGAGTTGATGAGGCAAAACAAGATTTCATGGAAGTGGTGGAGTT
CCTTAAGAAGCCTGAGAGATTTACTGCTATTGGAGCTCGTATTCCAAAGG
GTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTTCTTGCCAAG
GCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTCCATATCAGGTTCTGA
GTTTGTTGAGATGTTTGTTGGTGTTGGTGCATCTAGAGTCCGAGATCTTT
TCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTATTTGTGGATGAAATT
GATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGGAGGGAATGATGA
AAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAGG
GTAATACTGGTATCATTGTGATTGCTGCAACTAACAGGGCGGACATTCTT
GATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACAGGTTACTGTTGA
TGTTCCT
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