FC924972

Overview
NameFC924972
Unique NameFC924972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:662..1318. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.968e-48
Identity = 95/178 (53.37%), Postives = 124/178 (69.66%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTG----IIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            V F DV GVDEAK++  E+V+FL+ P  FT +G ++P+GVLL GPPGTGKT+LA+A+AGEA VPFF +SGS+F EM+VGVGA RVR+LF  A++ AP I+F+DE+DA+                QTLNQLL ++DGF  N      ++ I ATN  + LD AL RPGRFDR + V +P
Sbjct:  264 VRFSDVQGVDEAKEELEEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKRNARDAA---HMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLP 438          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.188e-46
Identity = 94/182 (51.65%), Postives = 122/182 (67.03%), Query Frame = 1
Query:  115 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            ++E    ++F+D+ G++   +D  EVVE  LK PE F  +G   PKGVLL GPPGTGKTLLAKA+A E    F  + GSE V+ F+G GA  VRD+FK AKE +PCI+F+DEIDAV           + E ++TL QLL EMDGF+    + +IAATNR DILD A+LRPGRFDR + + +P
Sbjct:  138 EIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMP 319          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.188e-46
Identity = 94/182 (51.65%), Postives = 122/182 (67.03%), Query Frame = 1
Query:  115 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            ++E    ++F+D+ G++   +D  EVVE  LK PE F  +G   PKGVLL GPPGTGKTLLAKA+A E    F  + GSE V+ F+G GA  VRD+FK AKE +PCI+F+DEIDAV           + E ++TL QLL EMDGF+    + +IAATNR DILD A+LRPGRFDR + + +P
Sbjct:  138 EIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMP 319          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.188e-46
Identity = 94/182 (51.65%), Postives = 122/182 (67.03%), Query Frame = 1
Query:  115 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            ++E    ++F+D+ G++   +D  EVVE  LK PE F  +G   PKGVLL GPPGTGKTLLAKA+A E    F  + GSE V+ F+G GA  VRD+FK AKE +PCI+F+DEIDAV           + E ++TL QLL EMDGF+    + +IAATNR DILD A+LRPGRFDR + + +P
Sbjct:  138 EIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMP 319          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.188e-46
Identity = 94/182 (51.65%), Postives = 122/182 (67.03%), Query Frame = 1
Query:  115 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            ++E    ++F+D+ G++   +D  EVVE  LK PE F  +G   PKGVLL GPPGTGKTLLAKA+A E    F  + GSE V+ F+G GA  VRD+FK AKE +PCI+F+DEIDAV           + E ++TL QLL EMDGF+    + +IAATNR DILD A+LRPGRFDR + + +P
Sbjct:  138 EIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMP 319          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.078e-45
Identity = 94/182 (51.65%), Postives = 119/182 (65.38%), Query Frame = 1
Query:  115 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            ++E    + F D+ G++   +D  EVVE  LK PE F  +G   PKGVLL GPPGTGKTLLAKA+A E    F  + GSE V+ F+G GA  VRD+FK AKE +PCI+F+DEIDAV           + E ++TL QLL EMDGF+    + +IAATNR DILD A+LRPGRFDR + +  P
Sbjct:  138 ELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAP 319          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.047e-45
Identity = 91/182 (50.00%), Postives = 120/182 (65.93%), Query Frame = 1
Query:  115 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +++    V ++D+ G+++  Q+  EVVE  LK PE F  +G   PKG+LL GPPGTGKTLLAKA+A E    F  + GSE V+ F+G GAS V+D+FK AKE AP I+F+DEIDA+           + E ++TL QLL EMDGF+    + +I ATNR DILD A+LRPGRFDR + V  P
Sbjct:  160 EVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAP 341          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.898e-45
Identity = 93/182 (51.10%), Postives = 123/182 (67.58%), Query Frame = 1
Query:  115 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +++ +  V++DD+ G+DE  ++  EVVE  LK+PE F  +G   PKGVLL GPPGTGKTLLAKA+A  A   F  ++  E V+ F+G GA  VR+LF+ A+E AP I+F+DEIDA+           + E ++TL QLL EMDGF+    I VIAATNR DILD ALLRPGRFDR + + +P
Sbjct:  169 EVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLP 350          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.489e-43
Identity = 92/182 (50.55%), Postives = 119/182 (65.38%), Query Frame = 1
Query:  115 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            ++E    V+++ + G++E  ++  E VE  LKKPE F  IG   PKGVLL GPPGTGKTLLAKA+A E    F  I  SEFV  ++G GA  VR +F+ AKE +P I+F+DEIDAV           + E ++TL QLL E+DGFE    + ++AATNR DILD ALLRPGRFDR + V +P
Sbjct:  141 EVEEKPDVSYEQIGGLEEQVREVKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLP 322          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.318e-43
Identity = 94/180 (52.22%), Postives = 119/180 (66.11%), Query Frame = 1
Query:  121 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +PN  VT+ ++ G++E  ++  EVVE  LKKPE F  IG   PKGVLL GPPGTGKT+LAKA+A E+   F  +  SEF + FVG GA  VR+LF+ AK  AP I+F+DEIDA+             E ++TL QLL E+DGF     + +IAATNR DILD ALLRPGRFDR + V +P
Sbjct:  128 KPN--VTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLP 305          
The following BLAST results are available for this feature:
BLAST of FC924972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
YME1_SCHPO9.968e-4853.37Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
PSMR_METMP4.188e-4651.65Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM74.188e-4651.65Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM64.188e-4651.65Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM54.188e-4651.65Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METVS2.078e-4551.65Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METJA6.047e-4550.00Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PSMR_METKA7.898e-4551.10Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PSMR_METTH1.489e-4350.55Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_SULIY3.318e-4352.22Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN13FM1 TF Citrus clementina cDNA clone KN0AAP1YN13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924972 ID=FC924972; Name=FC924972; organism=Citrus clementina; type=EST; length=657bp
CCACTTATCTTAATTGGAGGGCTGTTCCTTCTCTCAAGGCGTTCATCTGG
TGGAATGGGCGGTCCTGGTGGGCCTGGTTTCCCCCTTGCCTTTGGTCAGT
CCAAAGCTAAATTCCAGATGGAACCAAATACTGGTGTGACATTTGATGAT
GTTGCCGGAGTTGATGAGGCAAAACAAGATTTCATGGAAGTGGTGGAGTT
CCTTAAGAAGCCTGAGAGATTTACTGCTATTGGAGCTCGTATTCCAAAGG
GTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTTCTTGCCAAG
GCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTCCATATCAGGTTCTGA
GTTTGTTGAGATGTTTGTTGGTGTTGGTGCATCTAGAGTCCGAGATCTTT
TCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTATTTGTGGATGAAATT
GATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGGAGGGAATGATGA
AAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAGG
GTAATACTGGTATCATTGTGATTGCTGCAACTAACAGGGCGGACATTCTT
GATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACAGGTTACTGTTGA
TGTTCCT
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