FC924972

Overview
NameFC924972
Unique NameFC924972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:662..1318. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.318e-43
Identity = 94/180 (52.22%), Postives = 119/180 (66.11%), Query Frame = 1
Query:  121 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +PN  VT+ ++ G++E  ++  EVVE  LKKPE F  IG   PKGVLL GPPGTGKT+LAKA+A E+   F  +  SEF + FVG GA  VR+LF+ AK  AP I+F+DEIDA+             E ++TL QLL E+DGF     + +IAATNR DILD ALLRPGRFDR + V +P
Sbjct:  128 KPN--VTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLP 305          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.318e-43
Identity = 94/180 (52.22%), Postives = 119/180 (66.11%), Query Frame = 1
Query:  121 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +PN  VT+ ++ G++E  ++  EVVE  LKKPE F  IG   PKGVLL GPPGTGKT+LAKA+A E+   F  +  SEF + FVG GA  VR+LF+ AK  AP I+F+DEIDA+             E ++TL QLL E+DGF     + +IAATNR DILD ALLRPGRFDR + V +P
Sbjct:  128 KPN--VTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLP 305          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.318e-43
Identity = 94/180 (52.22%), Postives = 119/180 (66.11%), Query Frame = 1
Query:  121 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +PN  VT+ ++ G++E  ++  EVVE  LKKPE F  IG   PKGVLL GPPGTGKT+LAKA+A E+   F  +  SEF + FVG GA  VR+LF+ AK  AP I+F+DEIDA+             E ++TL QLL E+DGF     + +IAATNR DILD ALLRPGRFDR + V +P
Sbjct:  128 KPN--VTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLP 305          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.318e-43
Identity = 94/180 (52.22%), Postives = 119/180 (66.11%), Query Frame = 1
Query:  121 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +PN  VT+ ++ G++E  ++  EVVE  LKKPE F  IG   PKGVLL GPPGTGKT+LAKA+A E+   F  +  SEF + FVG GA  VR+LF+ AK  AP I+F+DEIDA+             E ++TL QLL E+DGF     + +IAATNR DILD ALLRPGRFDR + V +P
Sbjct:  128 KPN--VTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLP 305          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.318e-43
Identity = 94/180 (52.22%), Postives = 119/180 (66.11%), Query Frame = 1
Query:  121 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +PN  VT+ ++ G++E  ++  EVVE  LKKPE F  IG   PKGVLL GPPGTGKT+LAKA+A E+   F  +  SEF + FVG GA  VR+LF+ AK  AP I+F+DEIDA+             E ++TL QLL E+DGF     + +IAATNR DILD ALLRPGRFDR + V +P
Sbjct:  128 KPN--VTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLP 305          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.318e-43
Identity = 88/183 (48.09%), Postives = 121/183 (66.12%), Query Frame = 1
Query:  112 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            F++E    V+++D+ G+D   ++  E VE  L KPE F  +G   PKGVLL GPPGTGKTLLAKA+A +    F  + GSEFV+ ++G GA  VR++F+ AKE AP I+F+DE+DA+           + E ++T+ QLL E+DGF+    + VI ATNR DILD A+LRPGRFDR + V +P
Sbjct:  130 FEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLP 312          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.392e-43
Identity = 90/183 (49.18%), Postives = 117/183 (63.93%), Query Frame = 1
Query:  112 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            F++     V+++D+ G+D+  Q+  E +E  LK PE F  +G   PKGVLL GPPG GKTL+AKA+A E    F  + GSE V  F+G GA  V +LF+ AKE AP I+F+DEIDA+             E  +TL QLL EMDGF+ +  + +IAATNR DILD ALLRPGRFDR + V +P
Sbjct:  128 FEVIERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPAIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLP 310          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.654e-43
Identity = 89/175 (50.86%), Postives = 118/175 (67.43%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            V ++D+ G++E KQ+  E VE+ LK  E F  IG R PKGVLL GPPGTGKTLLAKA+A E+G  F S+ G E    +VG     +R++F+KA+++APCI+F DEIDA+           +   ++ +NQLLTE+DG E    ++VIAATNR DI+D ALLRPGR DR + V VP
Sbjct:  449 VKWEDIGGLEEVKQELREAVEWPLKAKEVFEKIGVRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKARQSAPCIIFFDEIDAI--APKRGRDLSSAVTDKVVNQLLTELDGMEEPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVP 621          

HSP 2 Score: 161.384 bits (407), Expect = 3.796e-39
Identity = 82/175 (46.86%), Postives = 115/175 (65.71%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            VT++D+ G+ E  +   E++E  ++ PE F  +G   PKGVLLVGPPGTGKTLLAKA+A EAG  F+ I+G E +  +VG     +R +F++A+ENAP I+F+DEIDA+            +   + + QLLT MDG +G   ++VI ATNR + LD AL RPGRFDR++ + VP
Sbjct:  176 VTYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAI---APKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVP 347          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.654e-43
Identity = 91/175 (52.00%), Postives = 116/175 (66.29%), Query Frame = 1
Query:  136 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            VT+ ++ G++E  ++  EVVE  LK PE F  IG   PKGVLL GPPGTGKT+LAKA+A E+   F  +  SEF + FVG GA  VR+LF+ AK  AP I+F+DEIDA+             E ++TL QLL E+DGF+    + +IAATNR DILD ALLRPGRFDR + V +P
Sbjct:  131 VTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLP 305          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.647e-42
Identity = 90/183 (49.18%), Postives = 115/183 (62.84%), Query Frame = 1
Query:  112 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            F++     VT++D+ G+++  Q+  E +E  LK PE F  +G   PKGVLL GPPG GKTL+AKA+A      F  + GSE V  F+G GA  V +LF+ AKE AP I+F+DEIDA+             E  +TL QLL EMDGF+    + VIAATNR DILD ALLRPGRFDR + V +P
Sbjct:  127 FEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLP 309          
The following BLAST results are available for this feature:
BLAST of FC924972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
PSMR_SULIN3.318e-4352.22Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM3.318e-4352.22Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL3.318e-4352.22Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK3.318e-4352.22Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA3.318e-4352.22Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_ARCFU3.318e-4348.09Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PSMR_THEON7.392e-4349.18Proteasome-activating nucleotidase OS=Thermococcus... [more]
Y1156_METJA9.654e-4350.86Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
PSMR_SULSO9.654e-4352.00Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PSMR_PYRKO1.647e-4249.18Proteasome-activating nucleotidase OS=Pyrococcus k... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN13FM1 TF Citrus clementina cDNA clone KN0AAP1YN13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924972 ID=FC924972; Name=FC924972; organism=Citrus clementina; type=EST; length=657bp
CCACTTATCTTAATTGGAGGGCTGTTCCTTCTCTCAAGGCGTTCATCTGG
TGGAATGGGCGGTCCTGGTGGGCCTGGTTTCCCCCTTGCCTTTGGTCAGT
CCAAAGCTAAATTCCAGATGGAACCAAATACTGGTGTGACATTTGATGAT
GTTGCCGGAGTTGATGAGGCAAAACAAGATTTCATGGAAGTGGTGGAGTT
CCTTAAGAAGCCTGAGAGATTTACTGCTATTGGAGCTCGTATTCCAAAGG
GTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTTCTTGCCAAG
GCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTCCATATCAGGTTCTGA
GTTTGTTGAGATGTTTGTTGGTGTTGGTGCATCTAGAGTCCGAGATCTTT
TCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTATTTGTGGATGAAATT
GATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGGAGGGAATGATGA
AAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAGG
GTAATACTGGTATCATTGTGATTGCTGCAACTAACAGGGCGGACATTCTT
GATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACAGGTTACTGTTGA
TGTTCCT
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