FC924976

Overview
NameFC924976
Unique NameFC924976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13991 contig Ccv1_Contig13991:627..1377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_ECOLI (GTP pyrophosphokinase OS=Escherichia coli (strain K12) GN=relA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.800e-25
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 2 
Query:    5 LTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHS--SFVLQMVEWARWVLTWQCE 355
            L  DE+ D+  +R++ E  +DCY AL +VH  +  +P +  DY+  PK NGYQS+HTVV G G   +E+QIRTK+MH  AE G AAHW+YKEG       S     + W R ++ WQ E
Sbjct:  268 LAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEE 386
[Close]
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_ECOL6 (GTP pyrophosphokinase OS=Escherichia coli O6 GN=relA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.800e-25
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 2 
Query:    5 LTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHS--SFVLQMVEWARWVLTWQCE 355
            L  DE+ D+  +R++ E  +DCY AL +VH  +  +P +  DY+  PK NGYQS+HTVV G G   +E+QIRTK+MH  AE G AAHW+YKEG       S     + W R ++ WQ E
Sbjct:  268 LAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEE 386
[Close]
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_ECO57 (GTP pyrophosphokinase OS=Escherichia coli O157:H7 GN=relA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.800e-25
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 2 
Query:    5 LTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHS--SFVLQMVEWARWVLTWQCE 355
            L  DE+ D+  +R++ E  +DCY AL +VH  +  +P +  DY+  PK NGYQS+HTVV G G   +E+QIRTK+MH  AE G AAHW+YKEG       S     + W R ++ WQ E
Sbjct:  268 LAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEE 386
[Close]
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_BACSU (GTP pyrophosphokinase OS=Bacillus subtilis GN=relA PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.978e-24
Identity = 55/116 (47.41%), Postives = 74/116 (63.79%), Query Frame = 2 
Query:   14 DEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQ-MVEWARWVLTWQCEA 358
            +EI+D+  +R++V + +DCY  L ++H  W  +PG+ KDYI  PK N YQSLHT V G    PLEVQIRT EMH  AE+G AAHW YKEG   +     +  + W R +L +Q E+
Sbjct:  260 NEIYDLLAVRILVNSIKDCYAVLGIIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAHWAYKEGKAANEGATFEKKLSWFREILEFQNES 375
[Close]
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_MYXXA (GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.756e-24
Identity = 54/113 (47.79%), Postives = 72/113 (63.72%), Query Frame = 2 
Query:    5 LTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG------DCQHSSFVLQMVEW 325
            +  D+IHDI   R+I      CY+AL +VH++W  VPG+ KD+I  PK N YQSLHT + G     +EVQIRT EMH  AE G AAHW+YKEG      D +  +++ Q++EW
Sbjct:  273 IDFDQIHDIIAFRIIAPTAPSCYEALGLVHEMWKPVPGRFKDFIAIPKPNMYQSLHTTIIGPLSERVEVQIRTSEMHKIAEEGIAAHWKYKEGKAVISKDDEKFAWLRQLMEW 385
[Close]
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_STAES (GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 53/94 (56.38%), Postives = 62/94 (65.96%), Query Frame = 2 
Query:    2 KLTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 283
            K   D+I D+  +R+IV +  DCY  L +VH LW  +PG+ KDYI  PK N YQSLHT V G    PLE+QIRT EMH  AE G AAHW YKEG
Sbjct:  256 KKQFDQIFDLLAIRIIVNSINDCYATLGLVHTLWKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVAAHWAYKEG 349
[Close]
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_STAEQ (GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=relA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 53/94 (56.38%), Postives = 62/94 (65.96%), Query Frame = 2 
Query:    2 KLTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 283
            K   D+I D+  +R+IV +  DCY  L +VH LW  +PG+ KDYI  PK N YQSLHT V G    PLE+QIRT EMH  AE G AAHW YKEG
Sbjct:  256 KKQFDQIFDLLAIRIIVNSINDCYATLGLVHTLWKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVAAHWAYKEG 349
[Close]
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_STAAW (GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 2 
Query:    2 KLTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 283
            K   D+I D+  +R+IV +  DCY  L +VH LW  +PG+ KDYI  PK N YQSLHT V G    PLE+QIRT +MH  AE G AAHW YKEG
Sbjct:  263 KKQFDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAHWAYKEG 356
[Close]
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_STAAU (GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 2 
Query:    2 KLTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 283
            K   D+I D+  +R+IV +  DCY  L +VH LW  +PG+ KDYI  PK N YQSLHT V G    PLE+QIRT +MH  AE G AAHW YKEG
Sbjct:  263 KKQFDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAHWAYKEG 356
[Close]
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_STAAS (GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476) GN=relA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 2 
Query:    2 KLTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 283
            K   D+I D+  +R+IV +  DCY  L +VH LW  +PG+ KDYI  PK N YQSLHT V G    PLE+QIRT +MH  AE G AAHW YKEG
Sbjct:  263 KKQFDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAHWAYKEG 356
The following BLAST results are available for this feature:
BLAST of FC924976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RELA_ECOLI6.800e-2545.38GTP pyrophosphokinase OS=Escherichia coli (strain ... [more]
RELA_ECOL66.800e-2545.38GTP pyrophosphokinase OS=Escherichia coli O6 GN=re... [more]
RELA_ECO576.800e-2545.38GTP pyrophosphokinase OS=Escherichia coli O157:H7 ... [more]
RELA_BACSU1.978e-2447.41GTP pyrophosphokinase OS=Bacillus subtilis GN=relA... [more]
RELA_MYXXA5.756e-2447.79GTP pyrophosphokinase OS=Myxococcus xanthus GN=rel... [more]
RELA_STAES7.518e-2456.38GTP pyrophosphokinase OS=Staphylococcus epidermidi... [more]
RELA_STAEQ7.518e-2456.38GTP pyrophosphokinase OS=Staphylococcus epidermidi... [more]
RELA_STAAW6.364e-2355.32GTP pyrophosphokinase OS=Staphylococcus aureus (st... [more]
RELA_STAAU6.364e-2355.32GTP pyrophosphokinase OS=Staphylococcus aureus GN=... [more]
RELA_STAAS6.364e-2355.32GTP pyrophosphokinase OS=Staphylococcus aureus (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN19FM1 TF Citrus clementina cDNA clone KN0AAP1YN19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924976 ID=FC924976; Name=FC924976; organism=Citrus clementina; type=EST; length=751bp
GAAGCTGACCATGGATGAAATCCATGATATCCATGGTCTTCGTTTAATTG
TTGAAAATGAGGAAGACTGCTACCAAGCACTGAGAGTTGTTCATCAGTTG
TGGGCTGAAGTACCTGGAAAGATGAAGGATTACATAACCCGGCCCAAGTT
CAACGGGTATCAGTCGCTTCACACAGTGGTGACAGGTGAAGGTCTGGTTC
CACTTGAAGTTCAAATCCGAACAAAAGAGATGCATTTGCAGGCTGAGTTT
GGGTTTGCTGCTCATTGGAGATACAAAGAAGGTGATTGCCAGCATTCTTC
TTTTGTGCTTCAGATGGTTGAGTGGGCTAGATGGGTTCTTACCTGGCAGT
GTGAGGCAATGAGCAAAGATCGTTCTTGTGTTGGCAATGGTGACTCCATC
AAGCCACCATGCACGTTTCCCTCACATGCTGATGATTGCCCATTTTCTTA
TAAGCCTCAGTGCAGCCATGATGGACCTGTCTTTGTCATCATGATTGAGA
ATGATAAGATGTCAGTGCAGGAGTTTCCTACAAACGCCACAGTAATGGAT
TTGCTGGAAAGAGCCGGACGGGGAAGCTCAAGATGGTCGCCGTATGGGTT
CCCTCTGAAGGAAGAATTGAGGCCAAGGCTGAACCACAAGGCAGTAGGTG
ATCCCAGATGTAAGTTGAAGATGGGTGATGTGGTAGAGCTCACTCCAGCT
ATACCTGACAAATCTTTAACGGAATACAGAGAGGAGATCCAGCGGATGTA
T
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