FC924976

Overview
NameFC924976
Unique NameFC924976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13991 contig Ccv1_Contig13991:627..1377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_STAAR (GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=relA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 2
Query:    2 KLTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 283
            K   D+I D+  +R+IV +  DCY  L +VH LW  +PG+ KDYI  PK N YQSLHT V G    PLE+QIRT +MH  AE G AAHW YKEG
Sbjct:  263 KKQFDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAHWAYKEG 356          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_STAAN (GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315) GN=relA PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 2
Query:    2 KLTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 283
            K   D+I D+  +R+IV +  DCY  L +VH LW  +PG+ KDYI  PK N YQSLHT V G    PLE+QIRT +MH  AE G AAHW YKEG
Sbjct:  263 KKQFDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAHWAYKEG 356          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_STAAM (GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=relA PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 2
Query:    2 KLTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 283
            K   D+I D+  +R+IV +  DCY  L +VH LW  +PG+ KDYI  PK N YQSLHT V G    PLE+QIRT +MH  AE G AAHW YKEG
Sbjct:  263 KKQFDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAHWAYKEG 356          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RELA_STREQ (Putative GTP pyrophosphokinase OS=Streptococcus equisimilis GN=relA PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 2
Query:    2 KLTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 283
            K   D+I D+  +R ++E + D Y  +  +H+LW  +PG+ KDYI  PK NGYQS+HT V G    P+E+QIRTKEMH  AE+G AAHW YK+G
Sbjct:  256 KKRFDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGP-KGPIEIQIRTKEMHQVAEYGVAAHWAYKKG 348          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: SPOT_AQUAE (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Aquifex aeolicus GN=spoT PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = 2
Query:    5 LTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG----DCQHSSFVLQMVE 322
            + ++++HDI G+R+IV    +CY  L ++H L+  VPGK KDYI+ PK N YQSLHT V  +    +E QIRT EMH +AE G A+HW YKEG    D    S++ ++VE
Sbjct:  254 IRLEDVHDILGVRIIVNTVPECYTVLGIIHSLFRPVPGKFKDYISLPKPNLYQSLHTTVIADKGKLVEFQIRTWEMHERAEKGIASHWAYKEGKNPSDAGVYSWLRELVE 363          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: SPOT_SHIFL (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Shigella flexneri GN=spoT PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 2
Query:   20 IHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMS 364
            I DI+  R+IV + + CY+ L  +H L+   PG++KDYI  PK NGYQSLHT + G   VP+EVQIRT++M   AE G AAHW YKE     ++  ++   W + +L  Q  A S
Sbjct:  257 IMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGS 371          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: SPOT_ECOLI (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Escherichia coli (strain K12) GN=spoT PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 2
Query:   20 IHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMS 364
            I DI+  R+IV + + CY+ L  +H L+   PG++KDYI  PK NGYQSLHT + G   VP+EVQIRT++M   AE G AAHW YKE     ++  ++   W + +L  Q  A S
Sbjct:  257 IMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGS 371          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: SPOT_ECO57 (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Escherichia coli O157:H7 GN=spoT PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 2
Query:   20 IHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMS 364
            I DI+  R+IV + + CY+ L  +H L+   PG++KDYI  PK NGYQSLHT + G   VP+EVQIRT++M   AE G AAHW YKE     ++  ++   W + +L  Q  A S
Sbjct:  257 IMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGS 371          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: SPOT_SPICI (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Spiroplasma citri GN=spoT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 2
Query:   14 DEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGD 286
            D+IHDI  +R+I  + +DCY+ L  VHQ +  +  + KDYI  PK N YQSLHT +  +  +  EVQIRT+EM   AE G AAHWRYKEG+
Sbjct:  260 DDIHDILAVRIITNSVDDCYKVLGFVHQHYTPLNNRFKDYIATPKHNLYQSLHTTIVADDGLIFEVQIRTEEMDELAEQGVAAHWRYKEGE 350          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RSH_BRUSU (GTP pyrophosphokinase rsh OS=Brucella suis GN=rsh PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 2
Query:    5 LTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKE 280
            L+ +++ DI G R++V+  +DCY+AL ++H  W+ VPG+ KDYI+ PK N Y+S+HT + G     +E+QIRT+EM   AEFG AAH  YK+
Sbjct:  252 LSFEQLSDIFGFRVMVDTVQDCYRALGLIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKD 343          
The following BLAST results are available for this feature:
BLAST of FC924976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RELA_STAAR6.364e-2355.32GTP pyrophosphokinase OS=Staphylococcus aureus (st... [more]
RELA_STAAN6.364e-2355.32GTP pyrophosphokinase OS=Staphylococcus aureus (st... [more]
RELA_STAAM6.364e-2355.32GTP pyrophosphokinase OS=Staphylococcus aureus (st... [more]
RELA_STREQ1.086e-2251.06Putative GTP pyrophosphokinase OS=Streptococcus eq... [more]
SPOT_AQUAE1.568e-2147.27Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
SPOT_SHIFL4.561e-2145.22Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
SPOT_ECOLI4.561e-2145.22Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
SPOT_ECO574.561e-2145.22Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
SPOT_SPICI2.264e-2051.65Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
RSH_BRUSU2.264e-2047.83GTP pyrophosphokinase rsh OS=Brucella suis GN=rsh ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN19FM1 TF Citrus clementina cDNA clone KN0AAP1YN19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924976 ID=FC924976; Name=FC924976; organism=Citrus clementina; type=EST; length=751bp
GAAGCTGACCATGGATGAAATCCATGATATCCATGGTCTTCGTTTAATTG
TTGAAAATGAGGAAGACTGCTACCAAGCACTGAGAGTTGTTCATCAGTTG
TGGGCTGAAGTACCTGGAAAGATGAAGGATTACATAACCCGGCCCAAGTT
CAACGGGTATCAGTCGCTTCACACAGTGGTGACAGGTGAAGGTCTGGTTC
CACTTGAAGTTCAAATCCGAACAAAAGAGATGCATTTGCAGGCTGAGTTT
GGGTTTGCTGCTCATTGGAGATACAAAGAAGGTGATTGCCAGCATTCTTC
TTTTGTGCTTCAGATGGTTGAGTGGGCTAGATGGGTTCTTACCTGGCAGT
GTGAGGCAATGAGCAAAGATCGTTCTTGTGTTGGCAATGGTGACTCCATC
AAGCCACCATGCACGTTTCCCTCACATGCTGATGATTGCCCATTTTCTTA
TAAGCCTCAGTGCAGCCATGATGGACCTGTCTTTGTCATCATGATTGAGA
ATGATAAGATGTCAGTGCAGGAGTTTCCTACAAACGCCACAGTAATGGAT
TTGCTGGAAAGAGCCGGACGGGGAAGCTCAAGATGGTCGCCGTATGGGTT
CCCTCTGAAGGAAGAATTGAGGCCAAGGCTGAACCACAAGGCAGTAGGTG
ATCCCAGATGTAAGTTGAAGATGGGTGATGTGGTAGAGCTCACTCCAGCT
ATACCTGACAAATCTTTAACGGAATACAGAGAGGAGATCCAGCGGATGTA
T
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