FC924976

Overview
NameFC924976
Unique NameFC924976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13991 contig Ccv1_Contig13991:627..1377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RSH_BRUO2 (GTP pyrophosphokinase rsh OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rsh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 2
Query:    5 LTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKE 280
            L+ +++ DI G R++V+  +DCY+AL ++H  W+ VPG+ KDYI+ PK N Y+S+HT + G     +E+QIRT+EM   AEFG AAH  YK+
Sbjct:  252 LSFEQLSDIFGFRVMVDTVQDCYRALGLIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKD 343          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RSH_BRUME (GTP pyrophosphokinase rsh OS=Brucella melitensis GN=rsh PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 2
Query:    5 LTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKE 280
            L+ +++ DI G R++V+  +DCY+AL ++H  W+ VPG+ KDYI+ PK N Y+S+HT + G     +E+QIRT+EM   AEFG AAH  YK+
Sbjct:  252 LSFEQLSDIFGFRVMVDTVQDCYRALGLIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKD 343          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RSH_BRUAB (GTP pyrophosphokinase rsh OS=Brucella abortus GN=rsh PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 2
Query:    5 LTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKE 280
            L+ +++ DI G R++V+  +DCY+AL ++H  W+ VPG+ KDYI+ PK N Y+S+HT + G     +E+QIRT+EM   AEFG AAH  YK+
Sbjct:  252 LSFEQLSDIFGFRVMVDTVQDCYRALGLIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKD 343          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: RSH_BRUA2 (GTP pyrophosphokinase rsh OS=Brucella abortus (strain 2308) GN=rsh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 2
Query:    5 LTMDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKE 280
            L+ +++ DI G R++V+  +DCY+AL ++H  W+ VPG+ KDYI+ PK N Y+S+HT + G     +E+QIRT+EM   AEFG AAH  YK+
Sbjct:  252 LSFEQLSDIFGFRVMVDTVQDCYRALGLIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKD 343          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: SPOT_BORBU (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Borrelia burgdorferi GN=spoT PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.123e-19
Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 2
Query:   11 MDEIHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVV-TGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG---DCQHSSFVLQMVEW 325
            + +I D  G+R+I + +++CY+ L +VH++W  +PG++KDYI  PK N YQSLHT V   E    +E+QIRT+EM   A +G AAHW YKE         SF+ ++ +W
Sbjct:  271 LTQIFDTLGIRIICKKQKECYEILEIVHRVWKPIPGRLKDYIASPKENKYQSLHTTVRIPEDNQLIEIQIRTEEMDRIANYGVAAHWIYKEQIELKADDLSFINRIKKW 379          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: SPOT_VIBCH (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Vibrio cholerae GN=spoT PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 2
Query:   20 IHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYK 277
            I DI+  R++V+  + CY+ L  VH L+   P +MKDYI  PK NGYQSLHT + G   VP+EVQIRT++M   A+ G AAHW YK
Sbjct:  257 IMDIYAFRIVVDTADTCYRVLGQVHSLYKPRPARMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAHWSYK 342          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: SPOT_HAEIN (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Haemophilus influenzae GN=spoT PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.269e-19
Identity = 52/123 (42.28%), Postives = 73/123 (59.35%), Query Frame = 2
Query:   20 IHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGN 388
            I DI+  R+IV+N +DCY+ L  +H L+   PG++KDYI  PK NGYQSL T + G   VP+EV I T++M   AE G  AHW YKE     S+     V+  RW+     +++ + +  VGN
Sbjct:  230 IMDIYAFRVIVKNVDDCYRVLGQMHNLYKPRPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENGKNDSTTAQIRVQ--RWL-----QSLVEIQQSVGN 345          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: SPOT_MYCPN (Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Mycoplasma pneumoniae GN=spoT PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.983e-16
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 2
Query:    2 KLTMDE-----IHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKE 280
            KLT  E     IHD+  +RLIV++E DCY  L ++H  +  +    KDYI  PK N YQS+HT V  +GL  +E+QIRT+ M   +++GFA+HW YKE
Sbjct:  269 KLTFHEQNIAKIHDLFAIRLIVKSELDCYHLLGLIHLNFTVLMKHFKDYIASPKQNFYQSIHTTVRLKGL-NVEIQIRTQRMDHVSKYGFASHWIYKE 365          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: SPOT_MYCGE (Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Mycoplasma genitalium GN=spoT PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 2
Query:    2 KLTMDE-----IHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKE 280
            KLT+ E     IHD+  +RLI ++E DCY  L ++H  +       KDYI  PK N YQS+HT V  +GL  +E+QIRT++M   ++FG A+HW YKE
Sbjct:  256 KLTVHEQNISKIHDLFAIRLITKSELDCYHILGLIHLNFLIDSKYFKDYIASPKQNLYQSIHTTVRLKGL-NVEIQIRTQQMDNVSKFGLASHWIYKE 352          
BLAST of FC924976 vs. ExPASy Swiss-Prot
Match: Y381_RICFE (Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis GN=RF_0381 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 2
Query:   20 IHDIHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYK 277
            ++DI   R IV N++ CY   +++H  +  +  +  DYI  PK NGYQS+H V++G     +E+QIR+  MH Q ++G +AH  YK
Sbjct:  238 LNDILAFRAIVPNKKACYDVSKLIHLHYNTITSQFVDYIRYPKNNGYQSIHLVISGGNKGNIELQIRSTTMHRQTQYG-SAHHTYK 322          
The following BLAST results are available for this feature:
BLAST of FC924976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RSH_BRUO22.264e-2047.83GTP pyrophosphokinase rsh OS=Brucella ovis (strain... [more]
RSH_BRUME2.264e-2047.83GTP pyrophosphokinase rsh OS=Brucella melitensis G... [more]
RSH_BRUAB2.264e-2047.83GTP pyrophosphokinase rsh OS=Brucella abortus GN=r... [more]
RSH_BRUA22.264e-2047.83GTP pyrophosphokinase rsh OS=Brucella abortus (str... [more]
SPOT_BORBU1.123e-1943.12Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
SPOT_VIBCH2.503e-1952.33Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
SPOT_HAEIN3.269e-1942.28Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
SPOT_MYCPN1.983e-1646.94Probable guanosine-3',5'-bis(diphosphate) 3'-pyrop... [more]
SPOT_MYCGE3.740e-1545.92Probable guanosine-3',5'-bis(diphosphate) 3'-pyrop... [more]
Y381_RICFE6.601e-1239.53Putative ankyrin repeat protein RF_0381 OS=Rickett... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN19FM1 TF Citrus clementina cDNA clone KN0AAP1YN19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924976 ID=FC924976; Name=FC924976; organism=Citrus clementina; type=EST; length=751bp
GAAGCTGACCATGGATGAAATCCATGATATCCATGGTCTTCGTTTAATTG
TTGAAAATGAGGAAGACTGCTACCAAGCACTGAGAGTTGTTCATCAGTTG
TGGGCTGAAGTACCTGGAAAGATGAAGGATTACATAACCCGGCCCAAGTT
CAACGGGTATCAGTCGCTTCACACAGTGGTGACAGGTGAAGGTCTGGTTC
CACTTGAAGTTCAAATCCGAACAAAAGAGATGCATTTGCAGGCTGAGTTT
GGGTTTGCTGCTCATTGGAGATACAAAGAAGGTGATTGCCAGCATTCTTC
TTTTGTGCTTCAGATGGTTGAGTGGGCTAGATGGGTTCTTACCTGGCAGT
GTGAGGCAATGAGCAAAGATCGTTCTTGTGTTGGCAATGGTGACTCCATC
AAGCCACCATGCACGTTTCCCTCACATGCTGATGATTGCCCATTTTCTTA
TAAGCCTCAGTGCAGCCATGATGGACCTGTCTTTGTCATCATGATTGAGA
ATGATAAGATGTCAGTGCAGGAGTTTCCTACAAACGCCACAGTAATGGAT
TTGCTGGAAAGAGCCGGACGGGGAAGCTCAAGATGGTCGCCGTATGGGTT
CCCTCTGAAGGAAGAATTGAGGCCAAGGCTGAACCACAAGGCAGTAGGTG
ATCCCAGATGTAAGTTGAAGATGGGTGATGTGGTAGAGCTCACTCCAGCT
ATACCTGACAAATCTTTAACGGAATACAGAGAGGAGATCCAGCGGATGTA
T
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