FC924986

Overview
NameFC924986
Unique NameFC924986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3752 contig Ccv1_Contig3752:2..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BRASO (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain ORS278) GN=rplL PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.480e-14
Identity = 48/133 (36.09%), Postives = 74/133 (55.64%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            IVD++S L+++E  +LA ++  K G+     + V  PG G +                       F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  +K GV K+EA+KI  +L++ GA+V ++
Sbjct:    7 IVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAPGGGGAAAAPAEEKTE-------------FTVVLASAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKEEAEKIKGQLEKAGAKVELK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BRAJA (50S ribosomal protein L7/L12 OS=Bradyrhizobium japonicum GN=rplL PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14
Identity = 49/133 (36.84%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            IVD++S L+++E  +LA ++  K G+     + V  P  G +                       F + L   G E K++VIKEVR  TGLGLKE+K+LVE  P  +K GV KDEA+KI  +L++ GA+V ++
Sbjct:    7 IVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAGPAGGGAAAAPAEEKTE-------------FTVVLASAG-EKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKDEAEKIKVQLEKAGAKVELK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BARBK (50S ribosomal protein L7/L12 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplL PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14
Identity = 48/136 (35.29%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +L+ ++  K G+     + V   G   +                       FD+ L   GA+ K+ VIKEVR  TGLGLKE+K+LVE  P  +K GV+KDEA+KI A+L+  GA++ ++
Sbjct:    4 LAKIVEDLSNLTVLEAAELSKLLEEKWGVSAAAPVAVAAVGSAAAPAAEEKTE---------------FDVVLVDGGAQ-KINVIKEVRALTGLGLKEAKDLVEGAPKPIKEGVSKDEAEKIKAQLEAAGAKIELK 123          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: MNP1_SCHPO (60 ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe GN=mnp1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14
Identity = 55/184 (29.89%), Postives = 92/184 (50.00%), Query Frame = 1
Query:    1 RHLRFITLHVSRNFKSSLQNPRSATNSHLLNRISARDYCTPSQEPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            R+LR   L  S+N+  SL N RS   +  +            Q  + ++  +VD+IS LSL+E  +L   ++ KL I E+  M  + P +  +                       ++LKLE + A +K KVIKEV+   GL L ++K+ VE  P +LK  + K++A+ I +KL+++  +V +E
Sbjct:   43 RNLR--ALSSSKNWARSLVNTRSFRAAASV------------QNNNAQIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAPEEKKEEKTT------WNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAEAIKSKLEKLSCKVVLE 206          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_SPHWW (50S ribosomal protein L7/L12 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +VD++S L+++E  +L+ ++  K G+     + V  P  G                         FD+ L G G + K+ VIKEVR  TGLGL E+K LVE  P  +K GV KDEA+K+  +L+E GA V ++
Sbjct:    7 LVDDLSALTVLEAAELSKLLEEKWGVSAAAAVAVAAPAGGAGAGAPAAEVKDE------------FDVILTGDGGK-KINVIKEVRAITGLGLTEAKTLVESAPKAVKEGVNKDEAEKLKKQLEEAGATVELK 126          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_NITHX (50S ribosomal protein L7/L12 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            IVD++S L+++E  +LA ++  K G+     + V   PG G +                       F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  +K GV KDEA+K+ A+L++ GA+V ++
Sbjct:    7 IVDDLSALTVLEAAELAKLLEEKWGVSAAAAVAVAAAPGAGAAAAAEEQTE---------------FTVVLAAAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKDEAEKLKAQLEKAGAKVELK 124          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_CHLP8 (50S ribosomal protein L7/L12 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 48/135 (35.56%), Postives = 72/135 (53.33%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM 549
            + ++V+EI  L+L E  +L   +  K G+   P   V+  GM  +                       FD+ L+  GA+ K+ VIK VR  TGLGLKE+KE+V+  P  +K  V+KDEA+KI  +LK+ GA+V +
Sbjct:    4 IETLVEEIGKLTLTEASELVKALEEKFGVSAAP--AVVAGGMAAAPAGEAAAAEEKTE----------FDVVLKAAGAQ-KINVIKVVRAITGLGLKEAKEMVDGAPKTVKEAVSKDEAEKIAKELKDAGAEVEL 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BRUSU (50S ribosomal protein L7/L12 OS=Brucella suis GN=rplL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +L+ ++  K G+     + V   G                           FD+ L   GA  K+ VIKEVR  TGLGLKE+K+LVE  P  +K G +KDEA+KI A+L+  GA+V ++
Sbjct:    4 LAKIVEDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAG--------------GAAPAAAAEEKTEFDVVLADGGAN-KINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGASKDEAEKIKAQLEAAGAKVELK 124          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BRUSI (50S ribosomal protein L7/L12 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +L+ ++  K G+     + V   G                           FD+ L   GA  K+ VIKEVR  TGLGLKE+K+LVE  P  +K G +KDEA+KI A+L+  GA+V ++
Sbjct:    4 LAKIVEDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAG--------------GAAPAAAAEEKTEFDVVLADGGAN-KINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGASKDEAEKIKAQLEAAGAKVELK 124          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BRUME (50S ribosomal protein L7/L12 OS=Brucella melitensis GN=rplL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +L+ ++  K G+     + V   G                           FD+ L   GA  K+ VIKEVR  TGLGLKE+K+LVE  P  +K G +KDEA+KI A+L+  GA+V ++
Sbjct:    4 LAKIVEDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAG--------------GAAPAAAAEEKTEFDVVLADGGAN-KINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGASKDEAEKIKAQLEAAGAKVELK 124          
The following BLAST results are available for this feature:
BLAST of FC924986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
RL7_BRASO5.480e-1436.0950S ribosomal protein L7/L12 OS=Bradyrhizobium sp.... [more]
RL7_BRAJA7.157e-1436.8450S ribosomal protein L7/L12 OS=Bradyrhizobium jap... [more]
RL7_BARBK7.157e-1435.2950S ribosomal protein L7/L12 OS=Bartonella bacilli... [more]
MNP1_SCHPO7.157e-1429.8960 ribosomal protein L12, mitochondrial OS=Schizos... [more]
RL7_SPHWW9.347e-1435.3450S ribosomal protein L7/L12 OS=Sphingomonas witti... [more]
RL7_NITHX9.347e-1436.5750S ribosomal protein L7/L12 OS=Nitrobacter hambur... [more]
RL7_CHLP89.347e-1435.5650S ribosomal protein L7/L12 OS=Chlorobaculum parv... [more]
RL7_BRUSU9.347e-1435.2950S ribosomal protein L7/L12 OS=Brucella suis GN=r... [more]
RL7_BRUSI9.347e-1435.2950S ribosomal protein L7/L12 OS=Brucella suis (str... [more]
RL7_BRUME9.347e-1435.2950S ribosomal protein L7/L12 OS=Brucella melitensi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 TF Citrus clementina cDNA clone KN0AAP8YA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924986 ID=FC924986; Name=FC924986; organism=Citrus clementina; type=EST; length=757bp
AGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCTC
CCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATTT
CGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGCC
TCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACCT
GGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATGT
GCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGA
GGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTT
CGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTA
AGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTTG
GTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGGC
TGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGG
AGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCAA
GACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCTA
TATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAAT
ACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATCA
TTTTAGG
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