FC924986

Overview
NameFC924986
Unique NameFC924986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_HELP2 (50S ribosomal protein L7/L12 OS=Helicobacter pylori (strain P12) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 1 
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +++ I  LS++E+ +L  +   K G+   P +       G +                       F++ L   GAE K+KVIK VR  TGLGLKE+K+  EK P +LK GV K+EA+ I  KL+EVGA+V ++
Sbjct:    8 VLEYIGSLSVLELAELVKMFEEKFGVSATPTVVAGAAVAGGAAAESEEKTE--------------FNVILADSGAE-KIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEVK 125
[Close]
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_HELAH (50S ribosomal protein L7/L12 OS=Helicobacter acinonychis (strain Sheeba) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 1 
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +++ I  LS++E+ +L  +   K G+   P +       G +                       F++ L   GAE K+KVIK VR  TGLGLKE+K+  EK P +LK GV K+EA+ I  KL+EVGA+V ++
Sbjct:    8 VLEYIGSLSVLELSELVKMFEEKFGVSATPTVVAGAAVAGGAVAESEEKTD--------------FNVILADSGAE-KIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEIK 125
[Close]
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_CITK8 (50S ribosomal protein L7/L12 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1 
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ +S +S+++V++L   +  K G+     + V    +  +                       FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPVEAAEEKTE------------------FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 121
[Close]
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_THEPX (50S ribosomal protein L7/L12 OS=Thermoanaerobacter sp. (strain X514) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 38/68 (55.88%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:  349 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            FD+ L+  G++ K+KVIK VR  TGLGLKE+K+LVE  P  +K GV+KDEA++I AK +EVGA+V ++
Sbjct:   59 FDVILQEVGSD-KIKVIKVVREVTGLGLKEAKDLVESAPKPVKEGVSKDEANQIKAKFEEVGAKVEIK 125
[Close]
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_THEP3 (50S ribosomal protein L7/L12 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 38/68 (55.88%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:  349 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            FD+ L+  G++ K+KVIK VR  TGLGLKE+K+LVE  P  +K GV+KDEA++I AK +EVGA+V ++
Sbjct:   59 FDVILQEVGSD-KIKVIKVVREVTGLGLKEAKDLVESAPKPVKEGVSKDEANQIKAKFEEVGAKVEIK 125
[Close]
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_SERP5 (50S ribosomal protein L7/L12 OS=Serratia proteamaculans (strain 568) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 44/133 (33.08%), Postives = 72/133 (54.14%), Query Frame = 1 
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ LS++E+++L   +  K G+    +   +  G   +                       FD+ L+G GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK G++KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEGVAALSVMEIVELIAAMEEKFGV----SAAAVAAGPAAAAEAVEEKTE--------------FDVVLKGIGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISKDDAEALKKALEEAGAEVEVK 121
[Close]
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_PASMU (50S ribosomal protein L7/L12 OS=Pasteurella multocida GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 45/133 (33.83%), Postives = 69/133 (51.88%), Query Frame = 1 
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ I+  S+ E+++L   +  K G+        +  G   +                       FD+ L G GA  K+ VIK VRG TGLGLKE+K+LVE  P +LK G++K EA+ +  +L+E GAQV ++
Sbjct:    8 IIEAIASKSVTEIVELIAAMEEKFGVSAAAAAVAVAAGPAEAAEEKTE-----------------FDVVLAGAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGISKAEAEALKKELEEAGAQVEVK 122
[Close]
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_KLEP7 (50S ribosomal protein L7/L12 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 43/133 (32.33%), Postives = 71/133 (53.38%), Query Frame = 1 
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ +S +S+++V++L   +  K G+     + V    +  +                       FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK G++KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPVEAAEEKTE------------------FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISKDDAEALKKSLEEAGAEVEVK 121
[Close]
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_KLEP3 (50S ribosomal protein L7/L12 OS=Klebsiella pneumoniae (strain 342) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 43/133 (32.33%), Postives = 71/133 (53.38%), Query Frame = 1 
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ +S +S+++V++L   +  K G+     + V    +  +                       FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK G++KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPVEAAEEKTE------------------FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISKDDAEALKKSLEEAGAEVEVK 121
[Close]
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_HYDS0 (50S ribosomal protein L7/L12 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 49/136 (36.03%), Postives = 72/136 (52.94%), Query Frame = 1 
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +  IVD IS ++++EV +L   +  K G+     M    P  G +                       FD+ L+  GA  KL VIK VR  TGLGLKE+K+LV+  P  +K+GV+K+EA+ I  KL+E GA+V ++
Sbjct:    6 IDEIVDAISGMTVLEVAELVKKLEEKFGVSAAA-MVAASPAAGGAAASPAAEEKTE------------FDVILQDAGAN-KLNVIKVVRELTGLGLKEAKDLVDGAPKPIKQGVSKEEAENIKKKLEEAGAKVEVK 127
The following BLAST results are available for this feature:
BLAST of FC924986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
RL7_HELP23.007e-1235.3450S ribosomal protein L7/L12 OS=Helicobacter pylor... [more]
RL7_HELAH3.007e-1235.3450S ribosomal protein L7/L12 OS=Helicobacter acino... [more]
RL7_CITK83.007e-1233.0850S ribosomal protein L7/L12 OS=Citrobacter koseri... [more]
RL7_THEPX3.927e-1255.8850S ribosomal protein L7/L12 OS=Thermoanaerobacter... [more]
RL7_THEP33.927e-1255.8850S ribosomal protein L7/L12 OS=Thermoanaerobacter... [more]
RL7_SERP53.927e-1233.0850S ribosomal protein L7/L12 OS=Serratia proteamac... [more]
RL7_PASMU3.927e-1233.8350S ribosomal protein L7/L12 OS=Pasteurella multoc... [more]
RL7_KLEP73.927e-1232.3350S ribosomal protein L7/L12 OS=Klebsiella pneumon... [more]
RL7_KLEP33.927e-1232.3350S ribosomal protein L7/L12 OS=Klebsiella pneumon... [more]
RL7_HYDS03.927e-1236.0350S ribosomal protein L7/L12 OS=Hydrogenobaculum s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 TF Citrus clementina cDNA clone KN0AAP8YA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924986 ID=FC924986; Name=FC924986; organism=Citrus clementina; type=EST; length=757bp
AGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCTC
CCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATTT
CGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGCC
TCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACCT
GGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATGT
GCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGA
GGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTT
CGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTA
AGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTTG
GTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGGC
TGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGG
AGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCAA
GACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCTA
TATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAAT
ACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATCA
TTTTAGG
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