FC924986

Overview
NameFC924986
Unique NameFC924986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_ALKOO (50S ribosomal protein L7/L12 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 47/136 (34.56%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +  I++ I  + ++E+ +L      K G+     + V  P  G +                       FD+ LE  GA +K+ VIK VR  TGLGLKE+KE V+  P  LK GV+K+EA++I AKL+E GA V+++
Sbjct:    3 IEQILEAIENMKVLELNELVKAAEEKFGVSASAPVVVGGPVAGAAVEEEQTE----------------FDVVLENAGA-SKINVIKVVRELTGLGLKEAKEAVDGAPKTLKEGVSKEEAEQIKAKLEEAGAAVTVK 121          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_AGRRK (50S ribosomal protein L7/L12 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IVD++S L+++E  +L+ ++  K G+     + V   G G                         FD+ L   GA  K+ VIKEVR  TGLGLKE+K+LVE  P  +K  V+K EA  I  KL++ GA+  ++
Sbjct:    4 LAKIVDDLSSLTVLEAAELSKLLEEKWGVSAAAPVAVAAAGGG-------------AVAAVVEEEKTEFDVILTDAGAN-KINVIKEVRAITGLGLKEAKDLVEAAPKAVKEAVSKAEAADIKKKLEDAGAKADVK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_YERPY (50S ribosomal protein L7/L12 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ LS++E+++L   +  K G+    +   +  G   +                       FD+ L  +G E K+ VIK VRG TGLGLKE+K+LVE  P +LK GV KDEA+ +   L+E GA V ++
Sbjct:    9 ILEGVAALSVMEIVELISAMEEKFGV----SAAAVAAGPAAAVEAAEEQTE--------------FDVVLASFG-ENKVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVNKDEAETLKKSLEEAGASVEIK 122          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_YERPS (50S ribosomal protein L7/L12 OS=Yersinia pseudotuberculosis GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ LS++E+++L   +  K G+    +   +  G   +                       FD+ L  +G E K+ VIK VRG TGLGLKE+K+LVE  P +LK GV KDEA+ +   L+E GA V ++
Sbjct:    9 ILEGVAALSVMEIVELISAMEEKFGV----SAAAVAAGPAAAVEAAEEQTE--------------FDVVLASFG-ENKVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVNKDEAETLKKSLEEAGASVEIK 122          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_YERPP (50S ribosomal protein L7/L12 OS=Yersinia pestis (strain Pestoides F) GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ LS++E+++L   +  K G+    +   +  G   +                       FD+ L  +G E K+ VIK VRG TGLGLKE+K+LVE  P +LK GV KDEA+ +   L+E GA V ++
Sbjct:    9 ILEGVAALSVMEIVELISAMEEKFGV----SAAAVAAGPAAAVEAAEEQTE--------------FDVVLASFG-ENKVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVNKDEAETLKKSLEEAGASVEIK 122          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_YERPN (50S ribosomal protein L7/L12 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ LS++E+++L   +  K G+    +   +  G   +                       FD+ L  +G E K+ VIK VRG TGLGLKE+K+LVE  P +LK GV KDEA+ +   L+E GA V ++
Sbjct:    9 ILEGVAALSVMEIVELISAMEEKFGV----SAAAVAAGPAAAVEAAEEQTE--------------FDVVLASFG-ENKVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVNKDEAETLKKSLEEAGASVEIK 122          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_YERPE (50S ribosomal protein L7/L12 OS=Yersinia pestis GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ LS++E+++L   +  K G+    +   +  G   +                       FD+ L  +G E K+ VIK VRG TGLGLKE+K+LVE  P +LK GV KDEA+ +   L+E GA V ++
Sbjct:    9 ILEGVAALSVMEIVELISAMEEKFGV----SAAAVAAGPAAAVEAAEEQTE--------------FDVVLASFG-ENKVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVNKDEAETLKKSLEEAGASVEIK 122          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_YERPB (50S ribosomal protein L7/L12 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ LS++E+++L   +  K G+    +   +  G   +                       FD+ L  +G E K+ VIK VRG TGLGLKE+K+LVE  P +LK GV KDEA+ +   L+E GA V ++
Sbjct:    9 ILEGVAALSVMEIVELISAMEEKFGV----SAAAVAAGPAAAVEAAEEQTE--------------FDVVLASFG-ENKVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVNKDEAETLKKSLEEAGASVEIK 122          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_YERPA (50S ribosomal protein L7/L12 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ LS++E+++L   +  K G+    +   +  G   +                       FD+ L  +G E K+ VIK VRG TGLGLKE+K+LVE  P +LK GV KDEA+ +   L+E GA V ++
Sbjct:    9 ILEGVAALSVMEIVELISAMEEKFGV----SAAAVAAGPAAAVEAAEEQTE--------------FDVVLASFG-ENKVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVNKDEAETLKKSLEEAGASVEIK 122          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_YERP3 (50S ribosomal protein L7/L12 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ LS++E+++L   +  K G+    +   +  G   +                       FD+ L  +G E K+ VIK VRG TGLGLKE+K+LVE  P +LK GV KDEA+ +   L+E GA V ++
Sbjct:    9 ILEGVAALSVMEIVELISAMEEKFGV----SAAAVAAGPAAAVEAAEEQTE--------------FDVVLASFG-ENKVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVNKDEAETLKKSLEEAGASVEIK 122          
The following BLAST results are available for this feature:
BLAST of FC924986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
RL7_ALKOO3.927e-1234.5650S ribosomal protein L7/L12 OS=Alkaliphilus oreml... [more]
RL7_AGRRK3.927e-1234.5650S ribosomal protein L7/L12 OS=Agrobacterium radi... [more]
RL7_YERPY5.129e-1233.8350S ribosomal protein L7/L12 OS=Yersinia pseudotub... [more]
RL7_YERPS5.129e-1233.8350S ribosomal protein L7/L12 OS=Yersinia pseudotub... [more]
RL7_YERPP5.129e-1233.8350S ribosomal protein L7/L12 OS=Yersinia pestis (s... [more]
RL7_YERPN5.129e-1233.8350S ribosomal protein L7/L12 OS=Yersinia pestis bv... [more]
RL7_YERPE5.129e-1233.8350S ribosomal protein L7/L12 OS=Yersinia pestis GN... [more]
RL7_YERPB5.129e-1233.8350S ribosomal protein L7/L12 OS=Yersinia pseudotub... [more]
RL7_YERPA5.129e-1233.8350S ribosomal protein L7/L12 OS=Yersinia pestis bv... [more]
RL7_YERP35.129e-1233.8350S ribosomal protein L7/L12 OS=Yersinia pseudotub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 TF Citrus clementina cDNA clone KN0AAP8YA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924986 ID=FC924986; Name=FC924986; organism=Citrus clementina; type=EST; length=757bp
AGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCTC
CCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATTT
CGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGCC
TCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACCT
GGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATGT
GCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGA
GGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTT
CGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTA
AGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTTG
GTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGGC
TGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGG
AGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCAA
GACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCTA
TATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAAT
ACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATCA
TTTTAGG
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