FC924986

Overview
NameFC924986
Unique NameFC924986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3752 contig Ccv1_Contig3752:2..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BRUMB (50S ribosomal protein L7/L12 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +L+ ++  K G+     + V   G                           FD+ L   GA  K+ VIKEVR  TGLGLKE+K+LVE  P  +K G +KDEA+KI A+L+  GA+V ++
Sbjct:    4 LAKIVEDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAG--------------GAAPAAAAEEKTEFDVVLADGGAN-KINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGASKDEAEKIKAQLEAAGAKVELK 124          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BRUC2 (50S ribosomal protein L7/L12 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +L+ ++  K G+     + V   G                           FD+ L   GA  K+ VIKEVR  TGLGLKE+K+LVE  P  +K G +KDEA+KI A+L+  GA+V ++
Sbjct:    4 LAKIVEDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAG--------------GAAPAAAAEEKTEFDVVLADGGAN-KINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGASKDEAEKIKAQLEAAGAKVELK 124          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BRUAB (50S ribosomal protein L7/L12 OS=Brucella abortus GN=rplL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +L+ ++  K G+     + V   G                           FD+ L   GA  K+ VIKEVR  TGLGLKE+K+LVE  P  +K G +KDEA+KI A+L+  GA+V ++
Sbjct:    4 LAKIVEDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAG--------------GAAPAAAAEEKTEFDVVLADGGAN-KINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGASKDEAEKIKAQLEAAGAKVELK 124          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BRUA2 (50S ribosomal protein L7/L12 OS=Brucella abortus (strain 2308) GN=rplL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +L+ ++  K G+     + V   G                           FD+ L   GA  K+ VIKEVR  TGLGLKE+K+LVE  P  +K G +KDEA+KI A+L+  GA+V ++
Sbjct:    4 LAKIVEDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAG--------------GAAPAAAAEEKTEFDVVLADGGAN-KINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGASKDEAEKIKAQLEAAGAKVELK 124          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BRUA1 (50S ribosomal protein L7/L12 OS=Brucella abortus (strain S19) GN=rplL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +L+ ++  K G+     + V   G                           FD+ L   GA  K+ VIKEVR  TGLGLKE+K+LVE  P  +K G +KDEA+KI A+L+  GA+V ++
Sbjct:    4 LAKIVEDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAG--------------GAAPAAAAEEKTEFDVVLADGGAN-KINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGASKDEAEKIKAQLEAAGAKVELK 124          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_SYNJB (50S ribosomal protein L7/L12 OS=Synechococcus sp. GN=rplL PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 47/140 (33.57%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  133 PSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            PSE+VA I++E+  LSL+E  +L   +    G+        M+     +                       FD+ LE   A+ K+ ++K VR  TGLGLK++K+LVE  P  +K GV K+EA+ I  KL+E GA V ++
Sbjct:    2 PSERVAKILEELKALSLLEASELVKAIEETFGVSAAAPAGGMVMAAPVAAAAAAPAAAPEPVEEQTA-----FDVILEAVPADKKIAILKVVRELTGLGLKDAKDLVEAAPKPVKEGVAKEEANDIKKKLEEAGATVKIK 136          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_SYNJA (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplL PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  136 SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            SE+V  I++E+  LSL+E  +L   +    G+    +      GM  +                       FD+ LE   A+ K+ V+K VR  TGLGLK++K+LVE  P  +K G+ K+EA++I  KL+E GA V ++
Sbjct:    3 SERVQKILEELKALSLLEASELVKAIEEAFGV----SAAAPAGGMVMAAPVAAAAAPAPAAAPEPVEEQTAFDVILEAVPADKKIAVLKVVRELTGLGLKDAKDLVEAAPKPVKEGIPKEEANEIKKKLEEAGATVKVK 137          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_CAMHC (50S ribosomal protein L7/L12 OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rplL PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 49/133 (36.84%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +++ IS LS++E+ +L      K G+   P M     G G +                       FDL L   GAE K+KVIK VR  TGLGLKE+K+ VEK P++LK G+ K++A+K  A L+  GA+V ++
Sbjct:    8 VLEYISNLSVLELSELVKEFEEKFGVSAAPVMVAGGAGAGAAAAAEEKTE---------------FDLVLTDTGAE-KIKVIKAVRAITGLGLKEAKDAVEKTPSVLKEGMNKEDAEKAKADLEAAGAKVELK 124          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_RHOPT (50S ribosomal protein L7/L12 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            IVD++S L+++E  +LA ++  K G+     + V   PG G +                       F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  LK GV K+EA+K+ A+L++ GA+V ++
Sbjct:    7 IVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAAPGAGGAAAPAEEKTE--------------FTVVLASAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPLKEGVNKEEAEKVKAQLEKAGAKVELK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_RHOPA (50S ribosomal protein L7/L12 OS=Rhodopseudomonas palustris GN=rplL PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            IVD++S L+++E  +LA ++  K G+     + V   PG G +                       F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  LK GV K+EA+K+ A+L++ GA+V ++
Sbjct:    7 IVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAAPGAGGAAAPAEEKTE--------------FTVVLASAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPLKEGVNKEEAEKVKAQLEKAGAKVELK 125          
The following BLAST results are available for this feature:
BLAST of FC924986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
RL7_BRUMB9.347e-1435.2950S ribosomal protein L7/L12 OS=Brucella melitensi... [more]
RL7_BRUC29.347e-1435.2950S ribosomal protein L7/L12 OS=Brucella canis (st... [more]
RL7_BRUAB9.347e-1435.2950S ribosomal protein L7/L12 OS=Brucella abortus G... [more]
RL7_BRUA29.347e-1435.2950S ribosomal protein L7/L12 OS=Brucella abortus (... [more]
RL7_BRUA19.347e-1435.2950S ribosomal protein L7/L12 OS=Brucella abortus (... [more]
RL7_SYNJB1.221e-1333.5750S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]
RL7_SYNJA1.221e-1333.0950S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]
RL7_CAMHC1.221e-1336.8450S ribosomal protein L7/L12 OS=Campylobacter homi... [more]
RL7_RHOPT1.594e-1336.5750S ribosomal protein L7/L12 OS=Rhodopseudomonas p... [more]
RL7_RHOPA1.594e-1336.5750S ribosomal protein L7/L12 OS=Rhodopseudomonas p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 TF Citrus clementina cDNA clone KN0AAP8YA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924986 ID=FC924986; Name=FC924986; organism=Citrus clementina; type=EST; length=757bp
AGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCTC
CCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATTT
CGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGCC
TCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACCT
GGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATGT
GCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGA
GGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTT
CGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTA
AGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTTG
GTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGGC
TGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGG
AGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCAA
GACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCTA
TATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAAT
ACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATCA
TTTTAGG
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