FC924986

Overview
NameFC924986
Unique NameFC924986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_CAMJ8 (50S ribosomal protein L7/L12 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rplL PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 45/133 (33.83%), Postives = 69/133 (51.88%), Query Frame = 1 
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +++ IS LS++E+ +L      K G+   P M       G +                       FD+ L   GA+ K++VIK VR  TGLGLKE+K+ VE+ P+ LK GV K EA++   +L+E GA+V ++
Sbjct:    8 VLEYISNLSVLELSELVKEFEEKFGVSAAPVMVAGGAAAGGAAAAAEEKTE--------------FDIVLTDGGAK-KIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEGVAKAEAEEAKKQLEEAGAKVELK 125
[Close]
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BACST (50S ribosomal protein L7/L12 OS=Bacillus stearothermophilus GN=rplL PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:  349 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            FD+ L   GA+ K+KVIK VR  TGLGLKE+K+LV+  P  +K G+ K+EA++I A L+E GA+V ++
Sbjct:   56 FDVILADAGAQ-KIKVIKVVREITGLGLKEAKDLVDNTPKPIKEGIAKEEAEEIKAALEEAGAKVEIK 122
The following BLAST results are available for this feature:
BLAST of FC924986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
RL7_CAMJ89.673e-1133.8350S ribosomal protein L7/L12 OS=Campylobacter jeju... [more]
RL7_BACST9.673e-1151.4750S ribosomal protein L7/L12 OS=Bacillus stearothe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 TF Citrus clementina cDNA clone KN0AAP8YA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924986 ID=FC924986; Name=FC924986; organism=Citrus clementina; type=EST; length=757bp
AGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCTC
CCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATTT
CGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGCC
TCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACCT
GGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATGT
GCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGA
GGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTT
CGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTA
AGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTTG
GTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGGC
TGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGG
AGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCAA
GACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCTA
TATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAAT
ACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATCA
TTTTAGG
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