FC924986

Overview
NameFC924986
Unique NameFC924986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3752 contig Ccv1_Contig3752:2..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_RHOP5 (50S ribosomal protein L7/L12 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            IVD++S L+++E  +LA ++  K G+     + V  P    +                       F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  +K GV KDEA+K+ A+L++ GA+V ++
Sbjct:    7 IVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAGPAAAAAAPAEEKTE---------------FTVVLASAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKDEAEKVKAQLEKAGAKVELK 123          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_MICLU (50S ribosomal protein L7/L12 OS=Micrococcus luteus GN=rplL PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query:  349 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            FD+ L   GAE K+KVIK VR  TGLGLKE+KE+V+  P  LK GV+KDEA++I AKL+EVGA V ++
Sbjct:   52 FDVVLASAGAE-KIKVIKVVREITGLGLKEAKEVVDNAPKALKEGVSKDEAEEIKAKLEEVGASVEVK 118          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_METRJ (50S ribosomal protein L7/L12 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 48/137 (35.04%), Postives = 76/137 (55.47%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A +VD++S L+++E  DLA ++  K G+     + V   P  G +                       F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  +K GV KDEA+K+ A+L++ GA++ ++
Sbjct:    4 LAKLVDDLSSLTVLEAADLAKMLEEKWGVSAAAAVAVAAGPAAGGAAAAVEEQTE--------------FTVVLASAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVAKDEAEKLKAQLEKAGAKIELK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQV 543
            + SIV+++S L+L++  +L+  +  + G+     + V+    G S                       F++ LEG+ A+ K+ VIKEVR  T LGLKE+K+ VE  P  LK GV+KDEA+++  KL+  GA +
Sbjct:    4 IESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGESAAAVAEKTE--------------FEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKKLEAAGATI 122          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_NITWN (50S ribosomal protein L7/L12 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            IVD++S L+++E  +LA ++  K G+     + V   PG G                         F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  +K GV KDEA+KI A+L++ G +V ++
Sbjct:    7 IVDDLSALTVLEAAELAKLLEEKWGVSAAAAVAVAAAPGAG--------------GGAPAAEEKTEFTVVLAAAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVAKDEAEKIKAQLEKAGGKVELK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_METNO (50S ribosomal protein L7/L12 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 49/137 (35.77%), Postives = 76/137 (55.47%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A +VD++S L+++E  +LA ++  K G+     + V   P  G +                       F + L G G + K++VIKEVR  TGLGLKE+K+LVE  P  +K  V KDEA+KI A+L++ GA+V ++
Sbjct:    4 LAKLVDDLSSLTVLEAAELAKMLEEKWGVSAAAAVAVAAGPAAGGAAAPAVEEKTE-------------FTVVLAGAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKESVAKDEAEKIKAQLEKAGAKVELK 126          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_LISMH (50S ribosomal protein L7/L12 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +  I+  +   S++E+ DL   +  + G+     + V   G G +                       F ++L   G ++K+KVIK VR  TGLGLKE+KELV+  P  LK GV KDEA++I AKL+EVGA V ++
Sbjct:    5 IEEIIASVKEASVLELNDLVKAIEEEFGVTAAAPVAVAAAGGGAAEQTE-------------------FTVELASAG-DSKIKVIKVVREITGLGLKEAKELVDNAPKALKEGVAKDEAEEIKAKLEEVGANVEVK 120          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_LISIN (50S ribosomal protein L7/L12 OS=Listeria innocua GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +  I+  +   S++E+ DL   +  + G+     + V   G G +                       F ++L   G ++K+KVIK VR  TGLGLKE+KELV+  P  LK GV KDEA++I AKL+EVGA V ++
Sbjct:    5 IEEIIASVKEASVLELNDLVKAIEEEFGVTAAAPVAVAAAGGGAAEQTE-------------------FTVELASAG-DSKIKVIKVVREITGLGLKEAKELVDNAPKALKEGVAKDEAEEIKAKLEEVGANVEVK 120          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_COXBU (50S ribosomal protein L7/L12 OS=Coxiella burnetii GN=rplL PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ +S+++V+DL   +  K G+     + V  P  G                         F++K+  +G + K+ VIK +R  TGLGLKE+K+LVE VP+++K  V+K+EA+KI  +L+E GA+V +E
Sbjct:    9 ILEAVANMSVMDVVDLVKAMEEKFGVSAQAAIAVAGPVAG--------------GEAAAAEEKTEFNVKMVSFG-DNKIGVIKAIRTITGLGLKEAKDLVESVPSVVKESVSKEEAEKIKKELEEAGAKVELE 126          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_COXBR (50S ribosomal protein L7/L12 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ +S+++V+DL   +  K G+     + V  P  G                         F++K+  +G + K+ VIK +R  TGLGLKE+K+LVE VP+++K  V+K+EA+KI  +L+E GA+V +E
Sbjct:    9 ILEAVANMSVMDVVDLVKAMEEKFGVSAQAAIAVAGPVAG--------------GEAAAAEEKTEFNVKMVSFG-DNKIGVIKAIRTITGLGLKEAKDLVESVPSVVKESVSKEEAEKIKKELEEAGAKVELE 126          
The following BLAST results are available for this feature:
BLAST of FC924986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
RL7_RHOP51.594e-1335.3450S ribosomal protein L7/L12 OS=Rhodopseudomonas p... [more]
RL7_MICLU1.594e-1360.2950S ribosomal protein L7/L12 OS=Micrococcus luteus... [more]
RL7_METRJ1.594e-1335.0450S ribosomal protein L7/L12 OS=Methylobacterium r... [more]
RL7_LIBAF1.594e-1333.8350S ribosomal protein L7/L12 OS=Liberibacter afric... [more]
RL7_NITWN2.082e-1336.5750S ribosomal protein L7/L12 OS=Nitrobacter winogr... [more]
RL7_METNO2.082e-1335.7750S ribosomal protein L7/L12 OS=Methylobacterium n... [more]
RL7_LISMH2.082e-1335.2950S ribosomal protein L7/L12 OS=Listeria monocytog... [more]
RL7_LISIN2.082e-1335.2950S ribosomal protein L7/L12 OS=Listeria innocua G... [more]
RL7_COXBU2.082e-1333.0850S ribosomal protein L7/L12 OS=Coxiella burnetii ... [more]
RL7_COXBR2.082e-1333.0850S ribosomal protein L7/L12 OS=Coxiella burnetii ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 TF Citrus clementina cDNA clone KN0AAP8YA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924986 ID=FC924986; Name=FC924986; organism=Citrus clementina; type=EST; length=757bp
AGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCTC
CCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATTT
CGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGCC
TCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACCT
GGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATGT
GCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGA
GGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTT
CGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTA
AGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTTG
GTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGGC
TGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGG
AGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCAA
GACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCTA
TATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAAT
ACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATCA
TTTTAGG
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