FC924986

Overview
NameFC924986
Unique NameFC924986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_COXBN (50S ribosomal protein L7/L12 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ +S+++V+DL   +  K G+     + V  P  G                         F++K+  +G + K+ VIK +R  TGLGLKE+K+LVE VP+++K  V+K+EA+KI  +L+E GA+V +E
Sbjct:    9 ILEAVANMSVMDVVDLVKAMEEKFGVSAQAAIAVAGPVAG--------------GEAAAAEEKTEFNVKMVSFG-DNKIGVIKAIRTITGLGLKEAKDLVESVPSVVKESVSKEEAEKIKKELEEAGAKVELE 126          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_COXB2 (50S ribosomal protein L7/L12 OS=Coxiella burnetii (strain CbuG_Q212) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ +S+++V+DL   +  K G+     + V  P  G                         F++K+  +G + K+ VIK +R  TGLGLKE+K+LVE VP+++K  V+K+EA+KI  +L+E GA+V +E
Sbjct:    9 ILEAVANMSVMDVVDLVKAMEEKFGVSAQAAIAVAGPVAG--------------GEAAAAEEKTEFNVKMVSFG-DNKIGVIKAIRTITGLGLKEAKDLVESVPSVVKESVSKEEAEKIKKELEEAGAKVELE 126          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_COXB1 (50S ribosomal protein L7/L12 OS=Coxiella burnetii (strain CbuK_Q154) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ +S+++V+DL   +  K G+     + V  P  G                         F++K+  +G + K+ VIK +R  TGLGLKE+K+LVE VP+++K  V+K+EA+KI  +L+E GA+V +E
Sbjct:    9 ILEAVANMSVMDVVDLVKAMEEKFGVSAQAAIAVAGPVAG--------------GEAAAAEEKTEFNVKMVSFG-DNKIGVIKAIRTITGLGLKEAKDLVESVPSVVKESVSKEEAEKIKKELEEAGAKVELE 126          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_CHLPB (50S ribosomal protein L7/L12 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNM----CVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            + ++V+EI  LSL E  +L   + +K G+   P +        PG                           FD++L+  GA  K+ VIK VR  TGLGLKE+KE+V+  P ++K  V+K+EA+K+  +LK+ GA+V ++
Sbjct:    4 IEALVEEIGKLSLTEASELVKALEDKFGVSAAPAVFAGAAAAAPG----------------GEAEAKEEQTEFDVELKAVGAN-KINVIKAVRSITGLGLKEAKEMVDGAPKVVKEAVSKEEAEKVAKELKDAGAEVELK 126          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BEII9 (50S ribosomal protein L7/L12 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 49/137 (35.77%), Postives = 77/137 (56.20%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +LA ++  K G+     + V   P  G +                       F + L   G + K++VIKEVRG TGLGLKE+K+LVE  P  +K GV+K+EA+KI A L++ GA+V ++
Sbjct:    4 LAKIVEDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAGPAAGGAAAAPVEEQTE-------------FTVVLAAVG-DKKIEVIKEVRGVTGLGLKEAKDLVEAAPKPVKEGVSKEEAEKIKAALEKAGAKVELK 126          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_RHILO (50S ribosomal protein L7/L12 OS=Rhizobium loti GN=rplL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IVD++S L+++E  +L+ ++  K G+     + V   G   +                       FD+ L   GA+ K+ VIKEVR  TGLGLKE+K+LVE  P  +K GV+K +ADK  A+L+  GA+V ++
Sbjct:    4 LAKIVDDLSKLTVLEAAELSKLLEEKWGVSAAAPVAVAAAGGAAAAAAPAEEKTE-------------FDVVLTDAGAQ-KINVIKEVRAITGLGLKEAKDLVEAAPKPVKEGVSKADADKFKAQLEAAGAKVDLK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_OLICO (50S ribosomal protein L7/L12 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            IVD++S L+++E  +LA ++  K G+     + V   PG                           F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  LK GV KDEA+KI A L++ GA+V ++
Sbjct:    7 IVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAAPGAAAGGAPAEEKTE--------------FQVVLAAAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPLKEGVAKDEAEKIKAALEKAGAKVELK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_XANP2 (50S ribosomal protein L7/L12 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +  +VDE+S L+++E  +LA ++  K G+     + V     G +                       F + L   G E K++VIKEVR  TGLGLKE+K+LVE  P  +K  V+KDEA+K+ A+L++ GA+V ++
Sbjct:    4 LTKLVDELSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAAPAGAAAAAVEEQTE--------------FTVVLAAAG-EKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEAVSKDEAEKLKAQLEKAGAKVELK 124          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_SYNPX (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  136 SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            S K   I++ +  LSL+E  +L   +    G+    +  V+M   G +                       FD+ LE + A AK+KV+K VR  TGLGL ++K LVE  P  +K G++KDEA+ +  +++EVG +V+++
Sbjct:    2 SAKTDEILESLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAAGGGGGEVAEEKTE---------FDVILESFDAAAKIKVLKAVRNATGLGLGDAKALVEAAPKPIKEGISKDEAEALKKEIEEVGGKVTLK 131          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_METSB (50S ribosomal protein L7/L12 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            IV+++S L+++E  +LA ++  K G+     + V   P  G +                       F + L  +G + K++VIKEVR  TGLGLKE+K+LVE  P  +K GVTK+EA+KI A L++ GA+V ++
Sbjct:    7 IVEDLSTLTVLEAAELAKLLEEKWGVSAAAAVAVAAGPAAGAAAAAPAEEQTE-------------FTVVLAAFG-DKKIEVIKEVRAVTGLGLKEAKDLVEAAPKPVKEGVTKEEAEKIKAALEKAGAKVELK 126          
The following BLAST results are available for this feature:
BLAST of FC924986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
RL7_COXBN2.082e-1333.0850S ribosomal protein L7/L12 OS=Coxiella burnetii ... [more]
RL7_COXB22.082e-1333.0850S ribosomal protein L7/L12 OS=Coxiella burnetii ... [more]
RL7_COXB12.082e-1333.0850S ribosomal protein L7/L12 OS=Coxiella burnetii ... [more]
RL7_CHLPB2.082e-1332.8650S ribosomal protein L7/L12 OS=Chlorobium phaeoba... [more]
RL7_BEII92.082e-1335.7750S ribosomal protein L7/L12 OS=Beijerinckia indic... [more]
RL7_RHILO2.720e-1335.2950S ribosomal protein L7/L12 OS=Rhizobium loti GN=... [more]
RL7_OLICO2.720e-1337.3150S ribosomal protein L7/L12 OS=Oligotropha carbox... [more]
RL7_XANP23.552e-1334.5650S ribosomal protein L7/L12 OS=Xanthobacter autot... [more]
RL7_SYNPX3.552e-1331.6550S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]
RL7_METSB3.552e-1335.8250S ribosomal protein L7/L12 OS=Methylocella silve... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 TF Citrus clementina cDNA clone KN0AAP8YA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924986 ID=FC924986; Name=FC924986; organism=Citrus clementina; type=EST; length=757bp
AGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCTC
CCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATTT
CGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGCC
TCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACCT
GGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATGT
GCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGA
GGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTT
CGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTA
AGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTTG
GTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGGC
TGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGG
AGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCAA
GACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCTA
TATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAAT
ACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATCA
TTTTAGG
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