FC924986

Overview
NameFC924986
Unique NameFC924986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_DESPS (50S ribosomal protein L7/L12 OS=Desulfotalea psychrophila GN=rplL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            ++D I+ +S++E+ +L      K G+     + V   G+                          FD+ L   G+E K+KVIKEVR  TGLGLKE+K LVE  P  LK GV+KDEA ++ AKL+ VGA   ++
Sbjct:    8 VIDFIAGMSVLELSELIGEFEEKFGVSAAAPVAVAAAGVAAEAVEEKTE----------------FDVILASAGSE-KIKVIKEVRAITGLGLKEAKSLVESAPAALKEGVSKDEAAELKAKLEAVGATAEVK 123          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_SYNPW (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH7803) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  136 SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            S K   I++ +  LSL+E  +L   +    G+    +  V+M   G +                       FD+ LE + A AK+KV+K VR  TGLGL ++K +VE  P  +K GV+KDEA+ +   ++EVG +V+++
Sbjct:    2 SAKTDEILESLKTLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAGAGGGEAAEEKTE----------FDVVLESFDASAKIKVLKAVREATGLGLGDAKAMVEAAPKAIKEGVSKDEAEALKKAIEEVGGKVTLK 130          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_RHOPS (50S ribosomal protein L7/L12 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 48/134 (35.82%), Postives = 74/134 (55.22%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            IVD++S L+++E  +LA ++  K G+     + V   PG   +                       F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  +K GV KDEA+K+ A+L++ GA+V ++
Sbjct:    7 IVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAAPGAAAAAVEEKTE----------------FTVVLASAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPIKEGVNKDEAEKLKAQLEKAGAKVELK 123          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_RHOP2 (50S ribosomal protein L7/L12 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 48/134 (35.82%), Postives = 74/134 (55.22%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            IVD++S L+++E  +LA ++  K G+     + V   PG   +                       F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  +K GV K+EADK+ A+L++ GA+V ++
Sbjct:    7 IVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAAPGAAAAAVEEKTE----------------FTVMLAAAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKEEADKLKAQLEKAGAKVELK 123          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_METEP (50S ribosomal protein L7/L12 OS=Methylobacterium extorquens (strain PA1) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 48/137 (35.04%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +LA ++  K G+     + V   P  G                         F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  +K G TKDEA+K+ A+L++ GA+V ++
Sbjct:    4 LAKIVEDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAGPAAGAGAAAVEEQTE--------------FTVVLASAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGATKDEAEKLKAQLEKAGAKVELK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_METC4 (50S ribosomal protein L7/L12 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 48/137 (35.04%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +LA ++  K G+     + V   P  G                         F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  +K G TKDEA+K+ A+L++ GA+V ++
Sbjct:    4 LAKIVEDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAGPAAGAGAAAVEEQTE--------------FTVVLASAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGATKDEAEKLKAQLEKAGAKVELK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_MARMM (50S ribosomal protein L7/L12 OS=Maricaulis maris (strain MCS10) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            VA + DE+  L+++E  +L D++  K GIK    + V  P  G                         FD+ L G G + K+ VIKEVR  TGLGLKE+K+LVE  P  +K   +K EA++I AKL+  GA V ++
Sbjct:    4 VAKLCDELLALTILEAKELNDLLEEK-GIKAAAAVAVAGPAGG--------------GDAPAAEEKDEFDVVLTGAG-DKKINVIKEVRAITGLGLKEAKDLVEGAPKAVKEAASKTEAEEIKAKLEAAGASVELK 123          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_LISW6 (50S ribosomal protein L7/L12 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 47/136 (34.56%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +  I+  +   S++E+ DL   +  + G+     + V   G G +                       F ++L   G ++K+KVIK VR  TGLGLKE+KELV+  P  LK GV K+EA++I AKL+EVGA V ++
Sbjct:    5 IEEIIASVKEASVLELNDLVKAIEEEFGVTAAAPVAVAAAGGGAAEQTE-------------------FTVELSSAG-DSKIKVIKVVREITGLGLKEAKELVDNAPKALKEGVAKEEAEEIKAKLEEVGANVEVK 120          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_ENTS8 (50S ribosomal protein L7/L12 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 45/133 (33.83%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ +S +S+++V++L   +  K G+     + V   G   +                       FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAAGPAEAAEEKTE-----------------FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 122          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BACCN (50S ribosomal protein L7/L12 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 46/133 (34.59%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ +  ++++E+ DL   +  + G+     + V+  G G +                       FD++L   GA+ K+KVIK VR  TGLGLKE+KELV+  P ++K G +K+EA++I AKL+EVGA V ++
Sbjct:    6 IIEAVKSMTVLELNDLVKAIEEEFGVTAAAPVAVV-GGAGEAAAEKTE-----------------FDVELANAGAQ-KIKVIKVVREITGLGLKEAKELVDNTPKVIKEGASKEEAEEIKAKLEEVGAAVEVK 119          
The following BLAST results are available for this feature:
BLAST of FC924986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
RL7_DESPS3.552e-1336.0950S ribosomal protein L7/L12 OS=Desulfotalea psych... [more]
RL7_SYNPW4.639e-1331.6550S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]
RL7_RHOPS4.639e-1335.8250S ribosomal protein L7/L12 OS=Rhodopseudomonas p... [more]
RL7_RHOP24.639e-1335.8250S ribosomal protein L7/L12 OS=Rhodopseudomonas p... [more]
RL7_METEP4.639e-1335.0450S ribosomal protein L7/L12 OS=Methylobacterium e... [more]
RL7_METC44.639e-1335.0450S ribosomal protein L7/L12 OS=Methylobacterium c... [more]
RL7_MARMM4.639e-1336.7650S ribosomal protein L7/L12 OS=Maricaulis maris (... [more]
RL7_LISW64.639e-1334.5650S ribosomal protein L7/L12 OS=Listeria welshimer... [more]
RL7_ENTS84.639e-1333.8350S ribosomal protein L7/L12 OS=Enterobacter sakaz... [more]
RL7_BACCN4.639e-1334.5950S ribosomal protein L7/L12 OS=Bacillus cereus su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 TF Citrus clementina cDNA clone KN0AAP8YA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924986 ID=FC924986; Name=FC924986; organism=Citrus clementina; type=EST; length=757bp
AGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCTC
CCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATTT
CGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGCC
TCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACCT
GGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATGT
GCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGA
GGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTT
CGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTA
AGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTTG
GTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGGC
TGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGG
AGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCAA
GACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCTA
TATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAAT
ACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATCA
TTTTAGG
back to top