FC924986

Overview
NameFC924986
Unique NameFC924986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3752 contig Ccv1_Contig3752:2..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_AZOC5 (50S ribosomal protein L7/L12 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 48/137 (35.04%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +  +VDE+S L+++E  +LA ++  K G+     + V   P  G +                       F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  +K GV KDEA+K+ A+L++ GA+V ++
Sbjct:    4 LTKLVDELSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAAPAAGGAAAAVEEQTE--------------FTVVLANAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVAKDEAEKLKAQLEKAGAKVELK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_PROM4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  136 SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM--PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            S+K   I+D +  LSL+E  +L   +    G+    +  V+M  PG G                         FD+ LE + A AK+KV+KEVR  TGLGL E+K +VE  P  +K G +K++A+ +   ++ VG +V+++
Sbjct:    2 SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAG----------GGASAAGEAAEEKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEALKKAIEAVGGKVTLK 132          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_PECCP (50S ribosomal protein L7/L12 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ +S+++V++L   +  K G+     + V                               FD+ L+G GA  K+ VIK VRG TGLGLKE+K+LVE  P +LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 ILEAVAAMSVMDVVELVSAMEEKFGVSAAAAVAVAA------------------GPAEVAEEKTEFDVVLKGIGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVSKDDAEALKKSLEEAGAEVEVK 121          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_LIBAC (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 43/135 (31.85%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM 549
            + SIV+++S L+L++  +L+  +  + G+     +  + P +                          F++ LE + A++K+ VIKEVR  T LGLKE+KELVE +   L+ GV+KDEA+++  KL+  GA +S+
Sbjct:    4 IESIVEKLSSLTLIQAAELSKRLEEEWGVSASAPVAAVAPAVXXDVAVAEKTE---------------FEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKKKLEAAGATISL 123          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BACWK (50S ribosomal protein L7/L12 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 1
Query:  349 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            FD+ L   GA+ K+KVIK VR  TGLGLKE+KELV+  P  +K GVTK+EA+++ AKL+EVGA V ++
Sbjct:   53 FDVVLASAGAQ-KIKVIKAVREITGLGLKEAKELVDNTPKAIKEGVTKEEAEEMKAKLEEVGAAVEVK 119          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BACSU (50S ribosomal protein L7/L12 OS=Bacillus subtilis GN=rplL PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 1
Query:  349 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            FDL L G G++ K+KVIK VR  TGLGLKE+KELV+  P  LK G+ K+EA+++ AKL+EVGA V ++
Sbjct:   57 FDLILAGAGSQ-KIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEEVGASVEVK 123          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BACA2 (50S ribosomal protein L7/L12 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 1
Query:  349 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            FDL L G G++ K+KVIK VR  TGLGLKE+KELV+  P  LK G+ K+EA+++ AKL+EVGA V ++
Sbjct:   57 FDLILAGAGSQ-KIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEEVGASVEVK 123          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: MNP1_YEAST (54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae GN=MNP1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 49/147 (33.33%), Postives = 74/147 (50.34%), Query Frame = 1
Query:  142 KVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGF----------SXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            K++ IV +IS L+L+E   L + ++  L I E     + MP  GF          +                       F +KL+ +  + K KVIKEV+G  GL L E+K+ VE  P +LK  V KD+A+KI   L+++GA+VS+E
Sbjct:   53 KISKIVQDISQLTLLETSSLINELKTVLNIPE-----ISMPMGGFMAGAAGAGAGNVPSSTGEAGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPKVLKENVAKDDAEKIKKTLEDLGAKVSLE 194          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_GLUOX (50S ribosomal protein L7/L12 OS=Gluconobacter oxydans GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+E+S L+++E  +L+ ++  K G+     + V     G +                       F + L   G + K+ VIKEVRG TGLGLKE+K+LVE  P  +K G +KDEA KI   L++ GA+V ++
Sbjct:    4 LAKIVEELSALTVLEAAELSKMLEEKWGVSAAAPVAVAAAAAGGAAAAPAEEQTE-------------FTVVLADAG-DKKINVIKEVRGITGLGLKEAKDLVEGAPKTVKEGASKDEAAKIKKALEDAGAKVEVK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_CHLL2 (50S ribosomal protein L7/L12 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            + ++V+EI  L+L E  +L   +  K G+   P    ++ G+  +                       FD+ L   G E+K+ VIK VR  TGLGLKE+K+LV+  P  +K  V+KDEA+KI  +LK+VGA V ++
Sbjct:    3 IETLVEEIGKLTLTEASELVKALEEKFGVSAAP---AIVAGIASAAPAGDAPAQEEKTE---------FDVVLTSAG-ESKINVIKVVRALTGLGLKEAKDLVDGAPKTVKEAVSKDEAEKIAKELKDVGAGVELK 125          
The following BLAST results are available for this feature:
BLAST of FC924986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
RL7_AZOC54.639e-1335.0450S ribosomal protein L7/L12 OS=Azorhizobium cauli... [more]
RL7_PROM46.059e-1331.9150S ribosomal protein L7/L12 OS=Prochlorococcus ma... [more]
RL7_PECCP6.059e-1333.0850S ribosomal protein L7/L12 OS=Pectobacterium car... [more]
RL7_LIBAC6.059e-1331.8550S ribosomal protein L7/L12 OS=Liberibacter afric... [more]
RL7_BACWK6.059e-1357.3550S ribosomal protein L7/L12 OS=Bacillus weihenste... [more]
RL7_BACSU6.059e-1357.3550S ribosomal protein L7/L12 OS=Bacillus subtilis ... [more]
RL7_BACA26.059e-1357.3550S ribosomal protein L7/L12 OS=Bacillus amyloliqu... [more]
MNP1_YEAST6.059e-1333.3354S ribosomal protein L12, mitochondrial OS=Saccha... [more]
RL7_GLUOX7.913e-1334.5650S ribosomal protein L7/L12 OS=Gluconobacter oxyd... [more]
RL7_CHLL27.913e-1334.5650S ribosomal protein L7/L12 OS=Chlorobium limicol... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 TF Citrus clementina cDNA clone KN0AAP8YA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924986 ID=FC924986; Name=FC924986; organism=Citrus clementina; type=EST; length=757bp
AGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCTC
CCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATTT
CGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGCC
TCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACCT
GGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATGT
GCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGA
GGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTT
CGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTA
AGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTTG
GTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGGC
TGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGG
AGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCAA
GACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCTA
TATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAAT
ACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATCA
TTTTAGG
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