FC924986

Overview
NameFC924986
Unique NameFC924986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3752 contig Ccv1_Contig3752:2..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BACP2 (50S ribosomal protein L7/L12 OS=Bacillus pumilus (strain SAFR-032) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  349 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            FDL L G G + K+KVIK VR  TGLGLKE+KELV+  P  LK G+ K+EA+++ AKL+EVGA V ++
Sbjct:   55 FDLVLAGAG-DQKIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEEVGASVEVK 121          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BACLD (50S ribosomal protein L7/L12 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  349 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            FDL L G G + K+KVIK VR  TGLGLKE+KELV+  P  LK G+ K+EA+++ AKL+EVGA V ++
Sbjct:   57 FDLVLAGAG-DQKIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEEVGASVEVK 123          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_PROMA (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  136 SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            S+K   I+D +  LSL+E  +L   +    G+    +  V+M   G +                       FD+ LE + A AK+KV+KEVR  TGLGL ++K +VE  P  +K G +K++A+ +   ++ VG +V+++
Sbjct:    2 SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAATGGGEAAAEEKTE----------FDVVLESFDASAKIKVLKEVRNATGLGLGDAKAMVEAAPKTIKEGASKEDAEALKKAIEAVGGKVTLK 130          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_PROM1 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 43/139 (30.94%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  136 SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            S K   I+D +  LSL+E  +L   +    G+    +  V+M   G +                       F++ LE + A +K+KV+KEVR  TGLGL E+K LVE  P  +K G TK++A+ +   ++ VG +V+++
Sbjct:    2 SAKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAAGGDGADAAEEKTE---------FEVVLESFDASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIKEGATKEDAEALKKAIEAVGGKVTLK 131          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_PELPB (50S ribosomal protein L7/L12 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 46/136 (33.82%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            + ++V+EI  L+L E  +L   +  K G+   P   V + G+  +                       FD+ L   G E+K+ VIK VR  TGLGLKE+K+LV+  P  +K  ++KDEA+KI  +LK+ GA V ++
Sbjct:    3 IETLVEEIGKLTLTEASELVKALEEKFGVSAAP---VAVAGVAAAAAGDAPVVEEQTE----------FDVVLTAAG-ESKINVIKAVRAITGLGLKEAKDLVDGAPKTVKEAISKDEAEKIAKELKDAGASVEVK 124          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_METCA (50S ribosomal protein L7/L12 OS=Methylococcus capsulatus GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 45/133 (33.83%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ IS ++++E++DL   +  K G+     + V     G +                       FD+ +  +GA  K+ VIK +R  TGLGLKE+K+LVE VP+ +K G++K EAD I  KL+E GA V ++
Sbjct:    8 ILETISNMTVMEIVDLISAMEEKFGVSAAAAVAVAPVAAGAAAPAVEEKTE--------------FDVVMTSFGAN-KVNVIKAIREITGLGLKEAKDLVEGVPSTVKEGISKAEADDIKKKLEEAGAAVDVK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_ENT38 (50S ribosomal protein L7/L12 OS=Enterobacter sp. (strain 638) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ +S+++V++L   +  K G+     + V                               FD+ L+G GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAA------------------GPAEAAEEKTEFDVILKGIGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 121          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_ALHEH (50S ribosomal protein L7/L12 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ IS ++++EV++L + +  K G+     +       G                         FD+ L  +G+  K+ VIK VRG TGLGLKE+KE+VE  P+ +K G +K+EA++I AKL+E GA V ++
Sbjct:    8 ILETISNMTVMEVVELIEEMEEKFGVTAAAAVAAAPAAAG--------------GEAEAAEEQTEFDVVLSSFGSN-KVAVIKAVRGITGLGLKEAKEVVEGAPSPIKEGASKEEAEEIKAKLEEAGASVEVK 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RK12_NICSY (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 48/143 (33.57%), Postives = 71/143 (49.65%), Query Frame = 1
Query:  130 EPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEM---PNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM 549
            E  EKV  + DEIS L+L +   L + +++KLG+      P   V  PG                           FD+ ++   + A++  IK VR  T L LKE+KEL+E +P   K GV+KDEA+    +L+E GA+VS+
Sbjct:   56 EAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAAEAPAVVEEKTE-------------FDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSI 185          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_SYNS9 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain CC9902) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  136 SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            S K   I++ +  LSL+E  +L   +    G+    +  V+M   G +                       FD+ LE + A AK+KV+K VR  TGLGL ++K LVE  P L+K G +KD+A+ +   ++EVG +V+++
Sbjct:    2 SAKTDEILESLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAGGGEAAEEKTE------------FDVILESFEASAKIKVLKAVREATGLGLGDAKALVEAAPKLVKEGASKDDAEALKKAIEEVGGKVTIK 128          
The following BLAST results are available for this feature:
BLAST of FC924986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
RL7_BACP27.913e-1357.3550S ribosomal protein L7/L12 OS=Bacillus pumilus (... [more]
RL7_BACLD7.913e-1357.3550S ribosomal protein L7/L12 OS=Bacillus lichenifo... [more]
RL7_PROMA1.033e-1230.2250S ribosomal protein L7/L12 OS=Prochlorococcus ma... [more]
RL7_PROM11.033e-1230.9450S ribosomal protein L7/L12 OS=Prochlorococcus ma... [more]
RL7_PELPB1.033e-1233.8250S ribosomal protein L7/L12 OS=Pelodictyon phaeoc... [more]
RL7_METCA1.033e-1233.8350S ribosomal protein L7/L12 OS=Methylococcus caps... [more]
RL7_ENT381.033e-1233.0850S ribosomal protein L7/L12 OS=Enterobacter sp. (... [more]
RL7_ALHEH1.033e-1233.8350S ribosomal protein L7/L12 OS=Alkalilimnicola eh... [more]
RK12_NICSY1.033e-1233.5750S ribosomal protein L12, chloroplastic OS=Nicoti... [more]
RL7_SYNS91.350e-1231.6550S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 TF Citrus clementina cDNA clone KN0AAP8YA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924986 ID=FC924986; Name=FC924986; organism=Citrus clementina; type=EST; length=757bp
AGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCTC
CCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATTT
CGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGCC
TCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACCT
GGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATGT
GCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGA
GGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTT
CGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTA
AGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTTG
GTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGGC
TGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGG
AGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCAA
GACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCTA
TATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAAT
ACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATCA
TTTTAGG
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