FC924986

Overview
NameFC924986
Unique NameFC924986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_SYNS3 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain CC9311) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 43/139 (30.94%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  136 SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            S K   I++ +  LSL+E  +L   + +  G+    +  V+M   G +                       FD+ LE + A AK+KV+K VR  TGLGL ++K +VE  P  +K GV+KD+A+ +   ++EVG +V+++
Sbjct:    2 SAKTDEILESLKSLSLLEASELVKQIEDAFGVSAAASAGVVMAAPGAAGGGDAAEEKTE------------FDVVLESFDAAAKIKVLKAVREATGLGLGDAKAMVEAAPKAIKEGVSKDDAEALKKAIEEVGGKVTIK 128          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_PROMT (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 43/139 (30.94%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  136 SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            S K   I+D +  LSL+E  +L   +    G+    +  V+M   G +                       F++ LE + A +K+KV+KEVR  TGLGL E+K LVE  P  +K G TK++A+ +   ++ VG +V+++
Sbjct:    2 SAKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAAGGDGADAAEEKTE---------FEVVLESFEASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIKEGATKEDAEALKKAIEAVGGKVTLK 131          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_LISMO (50S ribosomal protein L7/L12 OS=Listeria monocytogenes GN=rplL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +  I+  +   S++E+ DL   +  + G+     + V   G   +                       F ++L   G ++K+KVIK VR  TGLGLKE+KELV+  P  LK G+ KDEA++I AKL+EVGA V ++
Sbjct:    5 IEEIIASVKEASVLELNDLVKAIEEEFGVTAAAPVAVAAAGGAAAEQTE-------------------FTVELASAG-DSKIKVIKVVREITGLGLKEAKELVDNAPKALKEGIAKDEAEEIKAKLEEVGANVEVK 120          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_GLOVI (50S ribosomal protein L7/L12 OS=Gloeobacter violaceus GN=rplL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 48/142 (33.80%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  136 SEKVASIVDEISCLSLVEVMDLADVVRNKLGIK-EMP--NMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            SE+V  I++++  LSL+E  +L   +    G+K E P     ++MPG+                          F + LE   A+ K+ ++K  R  TGLGLKE+K+LVE  P  +K GV KD+A  I  KL+E GA+ S++
Sbjct:    3 SERVEKILEDLKALSLLEAAELVKGIEEVFGVKAEAPAGGGMMVMPGV-------MPGAPAAAAPAEPVEEQTEFTVMLEEVPADKKIAILKVAREITGLGLKEAKDLVEAAPKAVKEGVNKDDAATIKKKLEEAGAKASIK 137          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_DESAH (50S ribosomal protein L7/L12 OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +V+ I+ +S++E+ +L   +  K G+     + +M  G                           FD+ LE  G + K+ VIKEVR  TGLGLKE+K LV++ P  +K G+ K+EA+KI A+L+  GAQVS++
Sbjct:    9 VVEFIANMSVLELSELVKELEEKFGVSAAAPVAMMAAG-------------GAADAGAAAEEQTEFDVILEAAG-DKKIGVIKEVRAITGLGLKEAKALVDEAPKPVKEGIVKEEAEKIKAQLEAAGAQVSVK 127          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_COPPD (50S ribosomal protein L7/L12 OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 46/136 (33.82%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +  I+ EI  +S+ ++ +L   +  K G+     + V  P  G                         FD+ L+  GA+ KL+VIK VR  TGLGLKE+K+LVE  P  +K GVTK+EA+++  KL+E GA + ++
Sbjct:    3 IEEIISEIENMSVSQLAELVKALEEKFGVSASMPVAVAAPVAG------------PAAAAPAEEEKTSFDVILKEAGAK-KLEVIKVVREITGLGLKEAKDLVESAPKPIKEGVTKEEAEELKKKLEEAGAVIELQ 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_CHLTE (50S ribosomal protein L7/L12 OS=Chlorobium tepidum GN=rplL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM 549
            + ++V+EI  L+L E  +L   +  K G+   P    +M G   +                       FD+ L+  GA  K+ VIK VR  TGLGLKE+K++V+  P  +K  V+KDEA+KI  +LK+ GA+V +
Sbjct:    4 IETLVEEIGKLTLTEASELVKALEEKFGVSAAP---AVMAGAVMAAPAGEAAAAEEKTE---------FDVVLKSAGAN-KINVIKVVRAITGLGLKEAKDMVDGAPKTVKEAVSKDEAEKIAKELKDAGAEVEL 125          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_SALAR (50S ribosomal protein L7/L12 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ +S+++V++L   +  K G+     + V   G                           FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVAAMSVMDVVELITAMEEKFGVSAAAAVAVAGAGAAAEAAEEKTE----------------FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 123          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_PROMM (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 42/139 (30.22%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  136 SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            S+K   I+D +  LSL+E  +L   + +  G+    +  V++   G +                       FD+ LE + A AK+KV+K VR  TGLGL ++K +VE  P  +K G+ K++A+ +   ++EVG +VS++
Sbjct:    2 SKKTDDILDSLKTLSLLEASELVKQIEDAFGVSAAASAGVVVAAGGAAGGGAAAEAAEEQTE---------FDVVLESFDASAKIKVLKAVREATGLGLGDAKAMVEAAPKTIKEGIAKNDAEALKKAIEEVGGKVSLK 131          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_PARL1 (50S ribosomal protein L7/L12 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 46/136 (33.82%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +L+ ++  K G+     + V   G                           FD+ L   G + K++VIKEVR  TGLGLKE+K+LVE  P  +K   +KDEA KI A+L++ GA+V ++
Sbjct:    4 LAKIVEDLSNLTVLEAAELSKMLEEKWGVSAAAPVAVAAAGAA---------------PAAAAEEQTEFDVILAAAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKTVKEAASKDEAAKIKAQLEKAGAKVELK 123          
The following BLAST results are available for this feature:
BLAST of FC924986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
RL7_SYNS31.350e-1230.9450S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]
RL7_PROMT1.350e-1230.9450S ribosomal protein L7/L12 OS=Prochlorococcus ma... [more]
RL7_LISMO1.350e-1233.8250S ribosomal protein L7/L12 OS=Listeria monocytog... [more]
RL7_GLOVI1.350e-1233.8050S ribosomal protein L7/L12 OS=Gloeobacter violac... [more]
RL7_DESAH1.350e-1234.5950S ribosomal protein L7/L12 OS=Desulfobacterium a... [more]
RL7_COPPD1.350e-1233.8250S ribosomal protein L7/L12 OS=Coprothermobacter ... [more]
RL7_CHLTE1.350e-1234.0750S ribosomal protein L7/L12 OS=Chlorobium tepidum... [more]
RL7_SALAR1.763e-1233.0850S ribosomal protein L7/L12 OS=Salmonella arizona... [more]
RL7_PROMM1.763e-1230.2250S ribosomal protein L7/L12 OS=Prochlorococcus ma... [more]
RL7_PARL11.763e-1233.8250S ribosomal protein L7/L12 OS=Parvibaculum lavam... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 TF Citrus clementina cDNA clone KN0AAP8YA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924986 ID=FC924986; Name=FC924986; organism=Citrus clementina; type=EST; length=757bp
AGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCTC
CCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATTT
CGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGCC
TCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACCT
GGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATGT
GCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGA
GGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTT
CGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTA
AGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTTG
GTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGGC
TGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGG
AGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCAA
GACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCTA
TATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAAT
ACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATCA
TTTTAGG
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