FC924986

Overview
NameFC924986
Unique NameFC924986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3752 contig Ccv1_Contig3752:2..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RK12_SPIOL (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 47/143 (32.87%), Postives = 73/143 (51.05%), Query Frame = 1
Query:  130 EPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEM---PNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM 549
            E  EK+  +  ++S L+L E   L D +++KLG+      P   V  PG                           FD+ ++   + A++ VIK VR  T LGLKE+KEL+E +P  LK GV+KD+A+    +L++ GA+VS+
Sbjct:   59 EAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGA-------------PADAAPAVEEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLEDAGAKVSI 188          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_NITOC (50S ribosomal protein L7/L12 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 42/133 (31.58%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ IS +++++V++L + +  K G+     +    P  G                         FD+ L  +G+  K++VIK VR  T LGLKE+K+LVE  P+ +K G++KDEAD+I  +L+E GA + ++
Sbjct:    8 ILETISNMTVMDVVELIEAMEEKFGVSAAAPIAAAAPAAGAEAGAAAEEKTE-------------FDVVLVSFGSN-KVQVIKAVRSITSLGLKEAKDLVEGAPSPVKEGISKDEADEIKKQLEEAGASIEVK 126          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_METPB (50S ribosomal protein L7/L12 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 46/136 (33.82%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+++E  +LA ++  K G+     + V     G                         F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  +K  V KDEA+K+ A+L++ GA+V ++
Sbjct:    4 LAKIVEDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAGPAG------------GGAAAPAAEEQTEFTVVLASAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKESVAKDEAEKLKAQLEKAGAKVELK 126          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_HALHL (50S ribosomal protein L7/L12 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ I+ +S++EV++L + +  K G+     +       G                         FD+ L  +G + K+ VIK VRG TGLGLKE+KE+VE  P  +K G +K+EAD I AKL+E GA V ++
Sbjct:    8 ILESIANMSVMEVVELIEAMEEKFGVTAAAAVAAAPAAGG-----------GGGDEGGAAEEQTEFDVILSSHG-DNKVGVIKAVRGVTGLGLKEAKEVVEGCPAPIKEGASKEEADDIKAKLEEAGASVELK 128          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_DESOH (50S ribosomal protein L7/L12 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            ++D I+ ++++E+ +L   +  K G+     + +M  GM                          FD+ L   G + K++VIKEVR  TGLGLKE+K LVE+ P  +K GV KDEA+K+ A+L+  GAQV ++
Sbjct:    9 VIDFIANMTVLELSELITELEEKFGVSAAAPVAMMAGGM------------PAGGDAGAAEEKTEFDVVLLTSG-DKKIQVIKEVRAITGLGLKEAKALVEEAPKPVKEGVPKDEAEKLKAQLEGAGAQVEIK 128          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_BARQU (50S ribosomal protein L7/L12 OS=Bartonella quintana GN=rplL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  145 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            +A IV+++S L+L+E  +L+ ++  K G+     + V       +                       FD+ L   GA+ K+ VIKEVR  TGLGLKE+K+LVE  P  +K G +KDEA+KI ++L+  GA+V  +
Sbjct:    4 LAKIVEDLSNLTLLEAAELSKLLEEKWGVSAAAPVAVATVAGAAAPAAEEKTE---------------FDVILVDCGAQ-KINVIKEVRALTGLGLKEAKDLVEGAPKPIKEGASKDEAEKIKSQLEAAGAKVEFK 123          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RK12_TOBAC (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum GN=RPL12 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 45/140 (32.14%), Postives = 69/140 (49.29%), Query Frame = 1
Query:  130 EPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM 549
            E  EKV  + DEIS L+L +   L + +++KLG+              F+                       FD+ ++   + A++  IK VR  T L LKE+KEL+E +P   K GV+KDEA+    +L+E GA+VS+
Sbjct:   56 EAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVT----------AASFAPAAVAAAPGAAAEAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSI 185          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_YERPG (50S ribosomal protein L7/L12 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 44/133 (33.08%), Postives = 67/133 (50.38%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ ++ LS++E+++L   +  K G+               +                       FD+ L  +G E K+ VIK VRG TGLGLKE+K+LVE  P +LK GV KDEA+ +   L+E GA V ++
Sbjct:    9 ILEGVAALSVMEIVELISAMEEKFGVS----------AAAVAAGPAAAVAAGPAAAVEAAEEQTEFDVVLASFG-ENKVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVNKDEAETLKKSLEEAGASVEIK 130          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_SALTY (50S ribosomal protein L7/L12 OS=Salmonella typhimurium GN=rplL PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ +S +S+++V++L   +  K G+     + V                               FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAA------------------GPAEAAEEKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 121          
BLAST of FC924986 vs. ExPASy Swiss-Prot
Match: RL7_SALTI (50S ribosomal protein L7/L12 OS=Salmonella typhi GN=rplL PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 1
Query:  154 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 552
            I++ +S +S+++V++L   +  K G+     + V                               FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAA------------------GPAEAAEEKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 121          
The following BLAST results are available for this feature:
BLAST of FC924986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
RK12_SPIOL1.763e-1232.8750S ribosomal protein L12, chloroplastic OS=Spinac... [more]
RL7_NITOC2.302e-1231.5850S ribosomal protein L7/L12 OS=Nitrosococcus ocea... [more]
RL7_METPB2.302e-1233.8250S ribosomal protein L7/L12 OS=Methylobacterium p... [more]
RL7_HALHL2.302e-1234.5950S ribosomal protein L7/L12 OS=Halorhodospira hal... [more]
RL7_DESOH2.302e-1234.5950S ribosomal protein L7/L12 OS=Desulfococcus oleo... [more]
RL7_BARQU2.302e-1234.5650S ribosomal protein L7/L12 OS=Bartonella quintan... [more]
RK12_TOBAC2.302e-1232.1450S ribosomal protein L12, chloroplastic OS=Nicoti... [more]
RL7_YERPG3.007e-1233.0850S ribosomal protein L7/L12 OS=Yersinia pestis bv... [more]
RL7_SALTY3.007e-1233.0850S ribosomal protein L7/L12 OS=Salmonella typhimu... [more]
RL7_SALTI3.007e-1233.0850S ribosomal protein L7/L12 OS=Salmonella typhi G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 TF Citrus clementina cDNA clone KN0AAP8YA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924986 ID=FC924986; Name=FC924986; organism=Citrus clementina; type=EST; length=757bp
AGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCTC
CCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATTT
CGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGCC
TCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACCT
GGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATGT
GCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGA
GGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTT
CGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTA
AGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTTG
GTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGGC
TGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGG
AGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCAA
GACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCTA
TATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAAT
ACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATCA
TTTTAGG
back to top